Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HOXD3P31249 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HOXD3P31249 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD3P31249 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD3P31249 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
HOXD3P31249 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXD3P31249 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC14.42□□□□□ -0.1
HOXD3P31249 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 AL049812.1-201ENST00000432563 2267 ntBASIC14.42□□□□□ -0.1
HOXD3P31249 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC14.42□□□□□ -0.1
HOXD3P31249 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
HOXD3P31249 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14.42□□□□□ -0.1
HOXD3P31249 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.42□□□□□ -0.1
HOXD3P31249 TPM4P1-201ENST00000436100 807 ntBASIC14.42□□□□□ -0.1
HOXD3P31249 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC14.42□□□□□ -0.1
HOXD3P31249 SNX5-210ENST00000481323 562 ntTSL 3 BASIC14.42□□□□□ -0.1
HOXD3P31249 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC14.42□□□□□ -0.1
HOXD3P31249 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
HOXD3P31249 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.42□□□□□ -0.1
HOXD3P31249 CR769767.2-201ENST00000622735 460 ntBASIC14.42□□□□□ -0.1
HOXD3P31249 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HOXD3P31249 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXD3P31249 AC036111.1-201ENST00000533973 1582 ntBASIC14.42□□□□□ -0.1
HOXD3P31249 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
HOXD3P31249 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD3P31249 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD3P31249 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
HOXD3P31249 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD3P31249 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
HOXD3P31249 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 AC112907.2-201ENST00000448639 330 ntBASIC14.41□□□□□ -0.1
HOXD3P31249 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD3P31249 MIR3180-5-201ENST00000583743 153 ntBASIC14.41□□□□□ -0.1
HOXD3P31249 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC14.41□□□□□ -0.1
HOXD3P31249 AC069148.1-201ENST00000608741 768 ntBASIC14.41□□□□□ -0.1
HOXD3P31249 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD3P31249 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD3P31249 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXD3P31249 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HOXD3P31249 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXD3P31249 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
HOXD3P31249 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD3P31249 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 AL109659.2-201ENST00000606809 1674 ntBASIC14.4□□□□□ -0.1
HOXD3P31249 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 KRT8P32-201ENST00000512863 1461 ntBASIC14.4□□□□□ -0.1
HOXD3P31249 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC14.4□□□□□ -0.1
HOXD3P31249 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 AP000523.1-201ENST00000398242 1049 ntBASIC14.4□□□□□ -0.1
HOXD3P31249 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 DAP-202ENST00000432074 1048 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXD3P31249 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC14.4□□□□□ -0.1
HOXD3P31249 DUSP5P1-201ENST00000441325 1139 ntBASIC14.4□□□□□ -0.1
HOXD3P31249 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD3P31249 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXD3P31249 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14.4□□□□□ -0.1
HOXD3P31249 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms