Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMARCA1P28370 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMARCA1P28370 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMARCA1P28370 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
SMARCA1P28370 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMARCA1P28370 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMARCA1P28370 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMARCA1P28370 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMARCA1P28370 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.38■■□□□ 1.01
SMARCA1P28370 MIR149-201ENST00000384879 89 ntBASIC21.38■■□□□ 1.01
SMARCA1P28370 AL031133.1-201ENST00000406807 723 ntBASIC21.38■■□□□ 1.01
SMARCA1P28370 HLA-F-220ENST00000434407 884 ntBASIC21.38■■□□□ 1.01
SMARCA1P28370 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.38■■□□□ 1.01
SMARCA1P28370 AC112907.2-201ENST00000448639 330 ntBASIC21.38■■□□□ 1.01
SMARCA1P28370 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.38■■□□□ 1.01
SMARCA1P28370 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.38■■□□□ 1.01
SMARCA1P28370 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.38■■□□□ 1.01
SMARCA1P28370 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.38■■□□□ 1.01
SMARCA1P28370 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
SMARCA1P28370 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
SMARCA1P28370 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMARCA1P28370 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
SMARCA1P28370 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMARCA1P28370 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SMARCA1P28370 AL499627.1-201ENST00000569373 2188 ntBASIC21.37■■□□□ 1.01
SMARCA1P28370 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.37■■□□□ 1.01
SMARCA1P28370 HBZP1-201ENST00000354915 429 ntBASIC21.37■■□□□ 1.01
SMARCA1P28370 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.37■■□□□ 1.01
SMARCA1P28370 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.37■■□□□ 1.01
SMARCA1P28370 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMARCA1P28370 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.37■■□□□ 1.01
SMARCA1P28370 KRT18P35-201ENST00000510488 1269 ntBASIC21.37■■□□□ 1.01
SMARCA1P28370 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.37■■□□□ 1.01
SMARCA1P28370 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.37■■□□□ 1.01
SMARCA1P28370 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.37■■□□□ 1.01
SMARCA1P28370 AC079602.3-201ENST00000623931 403 ntBASIC21.37■■□□□ 1.01
SMARCA1P28370 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMARCA1P28370 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.37■■□□□ 1.01
SMARCA1P28370 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMARCA1P28370 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMARCA1P28370 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
SMARCA1P28370 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMARCA1P28370 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.37■■□□□ 1.01
SMARCA1P28370 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.37■■□□□ 1.01
SMARCA1P28370 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMARCA1P28370 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMARCA1P28370 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMARCA1P28370 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMARCA1P28370 AL671277.2-201ENST00000458060 996 ntBASIC21.36■■□□□ 1.01
SMARCA1P28370 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.36■■□□□ 1.01
SMARCA1P28370 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMARCA1P28370 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.36■■□□□ 1.01
SMARCA1P28370 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMARCA1P28370 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.36■■□□□ 1.01
SMARCA1P28370 AL445228.2-201ENST00000605589 952 ntBASIC21.36■■□□□ 1.01
SMARCA1P28370 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.36■■□□□ 1.01
SMARCA1P28370 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.36■■□□□ 1.01
SMARCA1P28370 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SMARCA1P28370 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMARCA1P28370 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.36■■□□□ 1.01
SMARCA1P28370 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMARCA1P28370 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SMARCA1P28370 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SMARCA1P28370 AL138781.2-201ENST00000617896 1843 ntBASIC21.36■■□□□ 1.01
SMARCA1P28370 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
SMARCA1P28370 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMARCA1P28370 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMARCA1P28370 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMARCA1P28370 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMARCA1P28370 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.35■■□□□ 1.01
SMARCA1P28370 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMARCA1P28370 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.35■■□□□ 1.01
SMARCA1P28370 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC21.35■■□□□ 1.01
SMARCA1P28370 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.35■■□□□ 1.01
SMARCA1P28370 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.35■■□□□ 1.01
SMARCA1P28370 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.35■■□□□ 1.01
SMARCA1P28370 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMARCA1P28370 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMARCA1P28370 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMARCA1P28370 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
SMARCA1P28370 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMARCA1P28370 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMARCA1P28370 AL391807.1-203ENST00000604392 2365 ntBASIC21.34■■□□□ 1.01
SMARCA1P28370 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMARCA1P28370 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMARCA1P28370 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.34■■□□□ 1.01
SMARCA1P28370 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMARCA1P28370 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SMARCA1P28370 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
SMARCA1P28370 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
SMARCA1P28370 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms