Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FREM3P0C091 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.93■□□□□ 0.3
FREM3P0C091 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FREM3P0C091 KRT18P41-201ENST00000518924 1277 ntBASIC16.93■□□□□ 0.3
FREM3P0C091 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.93■□□□□ 0.3
FREM3P0C091 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.93■□□□□ 0.3
FREM3P0C091 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.93■□□□□ 0.3
FREM3P0C091 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
FREM3P0C091 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FREM3P0C091 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.92■□□□□ 0.3
FREM3P0C091 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.92■□□□□ 0.3
FREM3P0C091 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.92■□□□□ 0.3
FREM3P0C091 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.92■□□□□ 0.3
FREM3P0C091 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.92■□□□□ 0.3
FREM3P0C091 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
FREM3P0C091 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
FREM3P0C091 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.92■□□□□ 0.3
FREM3P0C091 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.92■□□□□ 0.3
FREM3P0C091 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.92■□□□□ 0.3
FREM3P0C091 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.92■□□□□ 0.3
FREM3P0C091 MIR4674-201ENST00000582457 87 ntBASIC16.92■□□□□ 0.3
FREM3P0C091 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
FREM3P0C091 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.92■□□□□ 0.3
FREM3P0C091 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
FREM3P0C091 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.92■□□□□ 0.3
FREM3P0C091 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FREM3P0C091 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.91■□□□□ 0.3
FREM3P0C091 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 AC069148.1-201ENST00000608741 768 ntBASIC16.91■□□□□ 0.3
FREM3P0C091 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
FREM3P0C091 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
FREM3P0C091 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.91■□□□□ 0.3
FREM3P0C091 AL023284.2-201ENST00000405850 579 ntBASIC16.91■□□□□ 0.3
FREM3P0C091 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.91■□□□□ 0.3
FREM3P0C091 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.91■□□□□ 0.3
FREM3P0C091 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
FREM3P0C091 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FREM3P0C091 HOXB1-202ENST00000577092 1414 ntBASIC16.91■□□□□ 0.3
FREM3P0C091 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.9■□□□□ 0.3
FREM3P0C091 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
FREM3P0C091 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.9■□□□□ 0.3
FREM3P0C091 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.9■□□□□ 0.3
FREM3P0C091 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
FREM3P0C091 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FREM3P0C091 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
FREM3P0C091 UPK3BP1-201ENST00000428678 509 ntBASIC16.9■□□□□ 0.3
FREM3P0C091 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FREM3P0C091 GCSHP2-201ENST00000560971 527 ntBASIC16.9■□□□□ 0.3
FREM3P0C091 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.9■□□□□ 0.3
FREM3P0C091 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.9■□□□□ 0.3
FREM3P0C091 AP000550.4-202ENST00000639755 178 ntBASIC16.9■□□□□ 0.3
FREM3P0C091 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.9■□□□□ 0.3
FREM3P0C091 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.9■□□□□ 0.3
FREM3P0C091 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
FREM3P0C091 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FREM3P0C091 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.9■□□□□ 0.3
FREM3P0C091 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FREM3P0C091 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FREM3P0C091 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.9■□□□□ 0.3
FREM3P0C091 MCCD1P1-208ENST00000445732 328 ntBASIC16.9■□□□□ 0.3
FREM3P0C091 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms