Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC14.48□□□□□ -0.09
CXCL1P09341 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 AC100791.3-201ENST00000617619 330 ntBASIC14.48□□□□□ -0.09
CXCL1P09341 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.48□□□□□ -0.09
CXCL1P09341 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.48□□□□□ -0.09
CXCL1P09341 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.48□□□□□ -0.09
CXCL1P09341 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.48□□□□□ -0.09
CXCL1P09341 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CXCL1P09341 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC14.48□□□□□ -0.09
CXCL1P09341 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CXCL1P09341 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CXCL1P09341 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CXCL1P09341 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL1P09341 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.47□□□□□ -0.09
CXCL1P09341 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.47□□□□□ -0.09
CXCL1P09341 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL1P09341 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL1P09341 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14.47□□□□□ -0.09
CXCL1P09341 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL1P09341 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 NALT1-201ENST00000429224 738 ntTSL 5 BASIC14.47□□□□□ -0.09
CXCL1P09341 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC14.47□□□□□ -0.09
CXCL1P09341 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.47□□□□□ -0.09
CXCL1P09341 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL1P09341 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 PHGDH-210ENST00000641115 1638 ntBASIC14.47□□□□□ -0.09
CXCL1P09341 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL1P09341 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC14.47□□□□□ -0.09
CXCL1P09341 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CXCL1P09341 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
CXCL1P09341 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CXCL1P09341 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CXCL1P09341 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 GAS2L1P2-201ENST00000436355 1356 ntBASIC14.47□□□□□ -0.09
CXCL1P09341 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL1P09341 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.46□□□□□ -0.09
CXCL1P09341 AC008741.2-201ENST00000612792 3115 ntBASIC14.46□□□□□ -0.09
CXCL1P09341 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.46□□□□□ -0.09
CXCL1P09341 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
CXCL1P09341 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC14.46□□□□□ -0.09
CXCL1P09341 AC138028.4-201ENST00000564984 1845 ntBASIC14.46□□□□□ -0.09
CXCL1P09341 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC14.46□□□□□ -0.09
CXCL1P09341 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC14.46□□□□□ -0.09
CXCL1P09341 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC14.46□□□□□ -0.09
CXCL1P09341 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CXCL1P09341 YBX1P1-201ENST00000445822 960 ntBASIC14.46□□□□□ -0.09
CXCL1P09341 AC007322.4-201ENST00000509611 723 ntBASIC14.46□□□□□ -0.09
CXCL1P09341 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC14.46□□□□□ -0.09
CXCL1P09341 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC14.46□□□□□ -0.09
CXCL1P09341 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC14.46□□□□□ -0.09
CXCL1P09341 MYCNOS-205ENST00000641950 531 ntBASIC14.46□□□□□ -0.09
CXCL1P09341 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
CXCL1P09341 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.46□□□□□ -0.09
CXCL1P09341 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.46□□□□□ -0.09
CXCL1P09341 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.46□□□□□ -0.09
CXCL1P09341 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL1P09341 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CXCL1P09341 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL1P09341 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL1P09341 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL1P09341 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL1P09341 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
CXCL1P09341 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL1P09341 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL1P09341 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms