Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.05■□□□□ 0.48
CLDN9O95484 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
CLDN9O95484 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLDN9O95484 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.05■□□□□ 0.48
CLDN9O95484 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
CLDN9O95484 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.05■□□□□ 0.48
CLDN9O95484 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.05■□□□□ 0.48
CLDN9O95484 REXO1L10P-201ENST00000615707 1290 ntBASIC18.05■□□□□ 0.48
CLDN9O95484 AC008622.2-201ENST00000617006 1229 ntBASIC18.05■□□□□ 0.48
CLDN9O95484 REXO1L12P-201ENST00000622156 912 ntBASIC18.05■□□□□ 0.48
CLDN9O95484 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CLDN9O95484 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CLDN9O95484 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLDN9O95484 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.05■□□□□ 0.48
CLDN9O95484 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CLDN9O95484 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.05■□□□□ 0.48
CLDN9O95484 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.05■□□□□ 0.48
CLDN9O95484 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLDN9O95484 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLDN9O95484 AC008556.1-201ENST00000610908 2040 ntBASIC18.05■□□□□ 0.48
CLDN9O95484 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLDN9O95484 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CLDN9O95484 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.04■□□□□ 0.48
CLDN9O95484 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN9O95484 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN9O95484 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN9O95484 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN9O95484 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.04■□□□□ 0.48
CLDN9O95484 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.04■□□□□ 0.48
CLDN9O95484 AC007613.1-201ENST00000572811 2597 ntBASIC18.04■□□□□ 0.48
CLDN9O95484 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CLDN9O95484 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
CLDN9O95484 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLDN9O95484 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLDN9O95484 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.03■□□□□ 0.48
CLDN9O95484 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CLDN9O95484 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.03■□□□□ 0.48
CLDN9O95484 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.03■□□□□ 0.48
CLDN9O95484 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.03■□□□□ 0.48
CLDN9O95484 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.03■□□□□ 0.48
CLDN9O95484 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLDN9O95484 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.03■□□□□ 0.48
CLDN9O95484 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLDN9O95484 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.03■□□□□ 0.48
CLDN9O95484 CA15P1-201ENST00000481698 905 ntBASIC18.03■□□□□ 0.48
CLDN9O95484 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.03■□□□□ 0.48
CLDN9O95484 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.03■□□□□ 0.48
CLDN9O95484 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.03■□□□□ 0.48
CLDN9O95484 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.03■□□□□ 0.48
CLDN9O95484 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.03■□□□□ 0.48
CLDN9O95484 Z99916.2-201ENST00000604037 246 ntBASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms