Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VPS4BO75351 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS4BO75351 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VPS4BO75351 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VPS4BO75351 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VPS4BO75351 LETM1P2-201ENST00000597330 2178 ntBASIC18.3■□□□□ 0.52
VPS4BO75351 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
VPS4BO75351 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 UNC93B2-201ENST00000285383 730 ntBASIC18.3■□□□□ 0.52
VPS4BO75351 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS4BO75351 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.3■□□□□ 0.52
VPS4BO75351 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.3■□□□□ 0.52
VPS4BO75351 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS4BO75351 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS4BO75351 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
VPS4BO75351 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS4BO75351 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS4BO75351 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VPS4BO75351 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS4BO75351 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VPS4BO75351 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VPS4BO75351 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS4BO75351 NOC2LP1-202ENST00000452600 2235 ntBASIC18.29■□□□□ 0.52
VPS4BO75351 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS4BO75351 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
VPS4BO75351 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.29■□□□□ 0.52
VPS4BO75351 TSPY23P-201ENST00000440136 739 ntBASIC18.29■□□□□ 0.52
VPS4BO75351 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS4BO75351 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS4BO75351 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS4BO75351 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VPS4BO75351 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 AL162741.1-201ENST00000565563 1558 ntBASIC18.29■□□□□ 0.52
VPS4BO75351 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VPS4BO75351 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS4BO75351 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS4BO75351 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VPS4BO75351 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 ABALON-201ENST00000629058 1903 ntBASIC18.28■□□□□ 0.52
VPS4BO75351 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
VPS4BO75351 FAM197Y1-201ENST00000421178 764 ntBASIC18.28■□□□□ 0.52
VPS4BO75351 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS4BO75351 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VPS4BO75351 KRT16P5-201ENST00000455284 522 ntBASIC18.28■□□□□ 0.52
VPS4BO75351 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VPS4BO75351 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS4BO75351 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VPS4BO75351 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
VPS4BO75351 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS4BO75351 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
VPS4BO75351 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms