Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 AC010331.1-201ENST00000611423 582 ntBASIC20.38■□□□□ 0.85
CLDN3O15551 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.38■□□□□ 0.85
CLDN3O15551 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.38■□□□□ 0.85
CLDN3O15551 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLDN3O15551 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLDN3O15551 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.37■□□□□ 0.85
CLDN3O15551 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.37■□□□□ 0.85
CLDN3O15551 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLDN3O15551 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.37■□□□□ 0.85
CLDN3O15551 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.37■□□□□ 0.85
CLDN3O15551 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLDN3O15551 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLDN3O15551 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.37■□□□□ 0.85
CLDN3O15551 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.37■□□□□ 0.85
CLDN3O15551 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.37■□□□□ 0.85
CLDN3O15551 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.37■□□□□ 0.85
CLDN3O15551 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.37■□□□□ 0.85
CLDN3O15551 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.37■□□□□ 0.85
CLDN3O15551 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLDN3O15551 AC034236.2-201ENST00000606662 1610 ntBASIC20.37■□□□□ 0.85
CLDN3O15551 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLDN3O15551 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLDN3O15551 KRT8P7-201ENST00000533003 1432 ntBASIC20.36■□□□□ 0.85
CLDN3O15551 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CLDN3O15551 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.36■□□□□ 0.85
CLDN3O15551 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.36■□□□□ 0.85
CLDN3O15551 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLDN3O15551 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
CLDN3O15551 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.36■□□□□ 0.85
CLDN3O15551 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLDN3O15551 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLDN3O15551 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLDN3O15551 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLDN3O15551 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.36■□□□□ 0.85
CLDN3O15551 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.36■□□□□ 0.85
CLDN3O15551 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.36■□□□□ 0.85
CLDN3O15551 AC063952.2-201ENST00000498792 1227 ntBASIC20.36■□□□□ 0.85
CLDN3O15551 GCSHP2-201ENST00000560971 527 ntBASIC20.36■□□□□ 0.85
CLDN3O15551 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLDN3O15551 AC024243.1-201ENST00000609234 778 ntBASIC20.36■□□□□ 0.85
CLDN3O15551 AC112497.1-201ENST00000624824 639 ntBASIC20.36■□□□□ 0.85
CLDN3O15551 AL590326.2-201ENST00000625139 305 ntBASIC20.36■□□□□ 0.85
CLDN3O15551 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLDN3O15551 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CLDN3O15551 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CLDN3O15551 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
CLDN3O15551 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLDN3O15551 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLDN3O15551 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CLDN3O15551 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.36■□□□□ 0.85
CLDN3O15551 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.35■□□□□ 0.85
CLDN3O15551 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.35■□□□□ 0.85
CLDN3O15551 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.35■□□□□ 0.85
CLDN3O15551 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.35■□□□□ 0.85
CLDN3O15551 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CLDN3O15551 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CLDN3O15551 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 KRT18P23-201ENST00000435622 1283 ntBASIC20.35■□□□□ 0.85
CLDN3O15551 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.35■□□□□ 0.85
CLDN3O15551 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.35■□□□□ 0.85
CLDN3O15551 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.35■□□□□ 0.85
CLDN3O15551 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
CLDN3O15551 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.35■□□□□ 0.85
CLDN3O15551 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 Z98044.1-201ENST00000632503 1764 ntBASIC20.35■□□□□ 0.85
CLDN3O15551 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.35■□□□□ 0.85
CLDN3O15551 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.35■□□□□ 0.85
CLDN3O15551 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CLDN3O15551 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CLDN3O15551 HOXB1-202ENST00000577092 1414 ntBASIC20.35■□□□□ 0.85
CLDN3O15551 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLDN3O15551 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLDN3O15551 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLDN3O15551 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLDN3O15551 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CLDN3O15551 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLDN3O15551 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CLDN3O15551 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms