Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MIR3652-201ENST00000579335 131 ntBASIC16.39■□□□□ 0.21
LIME1Q9H400 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
LIME1Q9H400 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
LIME1Q9H400 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.38■□□□□ 0.21
LIME1Q9H400 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.38■□□□□ 0.21
LIME1Q9H400 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.38■□□□□ 0.21
LIME1Q9H400 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
LIME1Q9H400 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.38■□□□□ 0.21
LIME1Q9H400 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.38■□□□□ 0.21
LIME1Q9H400 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.38■□□□□ 0.21
LIME1Q9H400 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.38■□□□□ 0.21
LIME1Q9H400 UNC93B7-201ENST00000509439 705 ntBASIC16.38■□□□□ 0.21
LIME1Q9H400 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.38■□□□□ 0.21
LIME1Q9H400 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.38■□□□□ 0.21
LIME1Q9H400 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.38■□□□□ 0.21
LIME1Q9H400 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
LIME1Q9H400 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.38■□□□□ 0.21
LIME1Q9H400 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.38■□□□□ 0.21
LIME1Q9H400 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
LIME1Q9H400 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIME1Q9H400 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.38■□□□□ 0.21
LIME1Q9H400 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LIME1Q9H400 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LIME1Q9H400 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.37■□□□□ 0.21
LIME1Q9H400 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
LIME1Q9H400 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 AP000523.1-201ENST00000398242 1049 ntBASIC16.37■□□□□ 0.21
LIME1Q9H400 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.37■□□□□ 0.21
LIME1Q9H400 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
LIME1Q9H400 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.37■□□□□ 0.21
LIME1Q9H400 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 AC092329.2-201ENST00000598402 547 ntBASIC16.37■□□□□ 0.21
LIME1Q9H400 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LIME1Q9H400 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
LIME1Q9H400 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LIME1Q9H400 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIME1Q9H400 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
LIME1Q9H400 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.36■□□□□ 0.21
LIME1Q9H400 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.36■□□□□ 0.21
LIME1Q9H400 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.36■□□□□ 0.21
LIME1Q9H400 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.36■□□□□ 0.21
LIME1Q9H400 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.36■□□□□ 0.21
LIME1Q9H400 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.36■□□□□ 0.21
LIME1Q9H400 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC16.36■□□□□ 0.21
LIME1Q9H400 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.36■□□□□ 0.21
LIME1Q9H400 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.36■□□□□ 0.21
LIME1Q9H400 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.36■□□□□ 0.21
LIME1Q9H400 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 CROCCP3-202ENST00000420820 1947 ntBASIC16.36■□□□□ 0.21
LIME1Q9H400 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.36■□□□□ 0.21
LIME1Q9H400 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.36■□□□□ 0.21
LIME1Q9H400 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.36■□□□□ 0.21
LIME1Q9H400 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
LIME1Q9H400 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LIME1Q9H400 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.36■□□□□ 0.21
LIME1Q9H400 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms