Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 AJ011932.1-201ENST00000621707 465 ntBASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 INTS4P1-201ENST00000438455 1935 ntBASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LRFN3Q9BTN0 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 AC097374.2-201ENST00000618617 1306 ntBASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 MRPL20P1-201ENST00000400819 433 ntBASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 ABCD1P5-201ENST00000445663 754 ntBASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 SIGLEC30P-201ENST00000455569 941 ntBASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 AC087641.1-201ENST00000557561 1021 ntBASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 MIR6752-201ENST00000618442 71 ntBASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 HEIH-201ENST00000623091 1652 ntBASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.59■□□□□ 0.57
LRFN3Q9BTN0 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRFN3Q9BTN0 OR8S1-201ENST00000310194 1080 ntBASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 MTDHP4-201ENST00000600287 670 ntBASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 AL606495.2-201ENST00000605867 535 ntBASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.58■□□□□ 0.56
LRFN3Q9BTN0 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 AC112777.1-201ENST00000540175 1423 ntBASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms