Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.65■□□□□ 0.26
USB1Q9BQ65 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USB1Q9BQ65 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
USB1Q9BQ65 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 AL138966.2-201ENST00000621997 464 ntBASIC16.64■□□□□ 0.25
USB1Q9BQ65 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.64■□□□□ 0.25
USB1Q9BQ65 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USB1Q9BQ65 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 AC010203.1-204ENST00000548782 407 ntBASIC16.63■□□□□ 0.25
USB1Q9BQ65 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 TNXA-203ENST00000507684 2038 ntBASIC16.63■□□□□ 0.25
USB1Q9BQ65 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USB1Q9BQ65 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USB1Q9BQ65 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USB1Q9BQ65 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
USB1Q9BQ65 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms