Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.89■□□□□ 0.46
VMP1Q96GC9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
VMP1Q96GC9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.46
VMP1Q96GC9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 AC087499.1-201ENST00000418141 1075 ntBASIC17.89■□□□□ 0.45
VMP1Q96GC9 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 AC097488.1-201ENST00000507834 756 ntBASIC17.89■□□□□ 0.45
VMP1Q96GC9 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.89■□□□□ 0.45
VMP1Q96GC9 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VMP1Q96GC9 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VMP1Q96GC9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.88■□□□□ 0.45
VMP1Q96GC9 AC120498.9-201ENST00000339021 3867 ntBASIC17.88■□□□□ 0.45
VMP1Q96GC9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.88■□□□□ 0.45
VMP1Q96GC9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
VMP1Q96GC9 AC009113.1-201ENST00000570267 2443 ntBASIC17.88■□□□□ 0.45
VMP1Q96GC9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.88■□□□□ 0.45
VMP1Q96GC9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.88■□□□□ 0.45
VMP1Q96GC9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.88■□□□□ 0.45
VMP1Q96GC9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VMP1Q96GC9 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
VMP1Q96GC9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VMP1Q96GC9 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VMP1Q96GC9 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VMP1Q96GC9 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.88■□□□□ 0.45
VMP1Q96GC9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VMP1Q96GC9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
VMP1Q96GC9 SLC25A1P4-201ENST00000567977 778 ntBASIC17.88■□□□□ 0.45
VMP1Q96GC9 AP005242.2-201ENST00000580065 1175 ntBASIC17.88■□□□□ 0.45
VMP1Q96GC9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VMP1Q96GC9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.88■□□□□ 0.45
VMP1Q96GC9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VMP1Q96GC9 KRT8P41-201ENST00000533985 1514 ntBASIC17.88■□□□□ 0.45
VMP1Q96GC9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 AL133373.2-201ENST00000623187 2828 ntBASIC17.87■□□□□ 0.45
VMP1Q96GC9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 AC008040.2-201ENST00000461049 708 ntBASIC17.87■□□□□ 0.45
VMP1Q96GC9 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VMP1Q96GC9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.87■□□□□ 0.45
VMP1Q96GC9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms