Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RAP1GAP2-201ENST00000254695 6661 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.31e-7■■■□□ 17.4
UPF1Q92900 RAP1GAP2-202ENST00000366401 6616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.571e-7■■■□□ 17.4
UPF1Q92900 RAP1GAP2-205ENST00000571555 4658 nt11.48□□□□□ -0.571e-7■■■□□ 17.4
UPF1Q92900 SH3GL1-205ENST00000598230 577 ntTSL 526.25■■□□□ 1.796e-8■■■□□ 17.3
UPF1Q92900 SH3GL1-203ENST00000593591 1036 ntTSL 420.32■□□□□ 0.846e-8■■■□□ 17.3
UPF1Q92900 SH3GL1-204ENST00000598219 619 ntTSL 310.69□□□□□ -0.76e-8■■■□□ 17.3
UPF1Q92900 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC34.19■■■■□ 3.066e-7■■■□□ 17.3
UPF1Q92900 MAPKAP1-210ENST00000427078 816 ntTSL 530.77■■■□□ 2.524e-6■■■□□ 17.3
UPF1Q92900 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC28.63■■■□□ 2.174e-6■■■□□ 17.3
UPF1Q92900 PAPOLG-202ENST00000412217 6074 ntTSL 1 (best)6.4□□□□□ -1.392e-6■■■□□ 17.3
UPF1Q92900 ZNF263-201ENST00000219069 3830 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.572e-6■■■□□ 17.3
UPF1Q92900 ZNF263-207ENST00000575332 2637 ntTSL 36.71□□□□□ -1.332e-6■■■□□ 17.3
UPF1Q92900 GOSR2-219ENST00000638697 1705 ntTSL 5 BASIC15.29■□□□□ 0.041e-8■■■□□ 17.3
UPF1Q92900 GOSR2-237ENST00000640443 3929 ntTSL 5 BASIC12.84□□□□□ -0.351e-8■■■□□ 17.3
UPF1Q92900 GOSR2-213ENST00000638216 3574 ntTSL 5 BASIC11.89□□□□□ -0.511e-8■■■□□ 17.3
UPF1Q92900 GOSR2-218ENST00000638634 3446 ntTSL 5 BASIC11.35□□□□□ -0.591e-8■■■□□ 17.3
UPF1Q92900 GOSR2-234ENST00000640138 3408 ntTSL 5 BASIC9.4□□□□□ -0.91e-8■■■□□ 17.3
UPF1Q92900 GOSR2-238ENST00000640495 3395 ntTSL 5 BASIC7.81□□□□□ -1.161e-8■■■□□ 17.3
UPF1Q92900 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.297e-11■■■□□ 17.3
UPF1Q92900 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.38e-11■■■□□ 17.3
UPF1Q92900 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.765e-7■■■□□ 17.3
UPF1Q92900 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.755e-7■■■□□ 17.3
UPF1Q92900 PCSK6-210ENST00000559499 3325 ntTSL 216.91■□□□□ 0.35e-7■■■□□ 17.3
UPF1Q92900 PCSK6-207ENST00000558951 543 ntTSL 314.26□□□□□ -0.135e-7■■■□□ 17.3
UPF1Q92900 PCSK6-202ENST00000398185 3723 ntTSL 1 (best)11.35□□□□□ -0.595e-7■■■□□ 17.3
UPF1Q92900 PCSK6-206ENST00000558864 3868 ntTSL 27.63□□□□□ -1.195e-7■■■□□ 17.3
UPF1Q92900 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC24.24■■□□□ 1.472e-6■■■□□ 17.3
UPF1Q92900 ZNF250-206ENST00000528258 677 ntTSL 524.29■■□□□ 1.483e-6■■■□□ 17.3
UPF1Q92900 ZNF250-207ENST00000529780 687 ntTSL 318.42■□□□□ 0.543e-6■■■□□ 17.3
UPF1Q92900 ZNF250-203ENST00000525694 592 ntTSL 416.07■□□□□ 0.163e-6■■■□□ 17.3
UPF1Q92900 ZNF250-208ENST00000533221 593 ntTSL 315.32■□□□□ 0.043e-6■■■□□ 17.3
UPF1Q92900 ZNF250-210ENST00000533622 672 ntTSL 314.46□□□□□ -0.093e-6■■■□□ 17.3
UPF1Q92900 ZNF250-209ENST00000533543 702 ntTSL 413.18□□□□□ -0.33e-6■■■□□ 17.3
UPF1Q92900 ZNF250-202ENST00000417550 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.43e-6■■■□□ 17.3
UPF1Q92900 ZNF250-201ENST00000292579 6364 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.833e-6■■■□□ 17.3
UPF1Q92900 KLHL18-201ENST00000232766 4620 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.732e-6■■■□□ 17.3
UPF1Q92900 C16orf70-207ENST00000569277 519 ntTSL 314.67□□□□□ -0.064e-7■■■□□ 17.3
UPF1Q92900 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.741e-8■■■□□ 17.3
UPF1Q92900 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 11e-8■■■□□ 17.3
UPF1Q92900 CFL1-210ENST00000530945 1509 ntTSL 221.09■□□□□ 0.971e-8■■■□□ 17.3
UPF1Q92900 CFL1-207ENST00000527752 766 ntTSL 517.31■□□□□ 0.361e-8■■■□□ 17.3
UPF1Q92900 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.244e-12■■■□□ 17.3
UPF1Q92900 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.344e-12■■■□□ 17.3
UPF1Q92900 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.243e-6■■■□□ 17.3
UPF1Q92900 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.464e-7■■■□□ 17.2
UPF1Q92900 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.233e-9■■■□□ 17.2
UPF1Q92900 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.11e-6■■■□□ 17.2
UPF1Q92900 GPD1L-206ENST00000474846 3776 ntTSL 210.05□□□□□ -0.81e-6■■■□□ 17.2
UPF1Q92900 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.431e-7■■■□□ 17.2
UPF1Q92900 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.091e-7■■■□□ 17.2
UPF1Q92900 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.061e-7■■■□□ 17.2
UPF1Q92900 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.626e-7■■■□□ 17.2
UPF1Q92900 FAM53C-201ENST00000239906 4377 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.598e-8■■■□□ 17.2
UPF1Q92900 UCP2-207ENST00000543714 567 ntTSL 220.16■□□□□ 0.827e-7■■■□□ 17.2
UPF1Q92900 PAK4-206ENST00000597715 633 ntTSL 519.21■□□□□ 0.674e-8■■■□□ 17.2
UPF1Q92900 RABGAP1L-215ENST00000485114 537 ntTSL 315.62■□□□□ 0.096e-7■■■□□ 17.2
UPF1Q92900 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC7.3□□□□□ -1.246e-7■■■□□ 17.2
UPF1Q92900 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.37□□□□□ -1.396e-7■■■□□ 17.2
UPF1Q92900 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.254e-6■■■□□ 17.2
UPF1Q92900 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC25.42■■□□□ 1.664e-6■■■□□ 17.2
UPF1Q92900 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC24.61■■□□□ 1.534e-6■■■□□ 17.2
UPF1Q92900 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.991e-6■■■□□ 17.2
UPF1Q92900 AC091167.7-201ENST00000622269 518 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.331e-9■■■□□ 17.2
UPF1Q92900 NGRN-201ENST00000331497 2784 ntTSL 1 (best)15.1■□□□□ 0.011e-9■■■□□ 17.2
UPF1Q92900 NGRN-203ENST00000411845 388 ntTSL 313.71□□□□□ -0.211e-9■■■□□ 17.2
UPF1Q92900 AC091167.3-201ENST00000561573 3838 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.541e-9■■■□□ 17.2
UPF1Q92900 NGRN-202ENST00000379095 7237 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.681e-9■■■□□ 17.2
UPF1Q92900 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.78■□□□□ 0.62e-9■■■□□ 17.2
UPF1Q92900 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.532e-9■■■□□ 17.2
UPF1Q92900 GPAT4-202ENST00000518628 1063 ntTSL 325.11■■□□□ 1.613e-6■■■□□ 17.2
UPF1Q92900 GPAT4-209ENST00000521349 842 ntTSL 225.11■■□□□ 1.613e-6■■■□□ 17.2
UPF1Q92900 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.033e-7■■■□□ 17.2
UPF1Q92900 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.113e-6■■■□□ 17.2
UPF1Q92900 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC16.1■□□□□ 0.173e-12■■■□□ 17.1
UPF1Q92900 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.312e-6■■■□□ 17.1
UPF1Q92900 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC28.14■■■□□ 2.19e-9■■■□□ 17.1
UPF1Q92900 GOSR2-228ENST00000639388 2514 ntTSL 520.19■□□□□ 0.829e-9■■■□□ 17.1
UPF1Q92900 GOSR2-225ENST00000639199 2137 ntTSL 518.7■□□□□ 0.589e-9■■■□□ 17.1
UPF1Q92900 GOSR2-223ENST00000639066 1180 ntTSL 518.4■□□□□ 0.549e-9■■■□□ 17.1
UPF1Q92900 GOSR2-236ENST00000640358 2313 ntTSL 518.18■□□□□ 0.59e-9■■■□□ 17.1
UPF1Q92900 GOSR2-244ENST00000640792 2452 ntTSL 517.99■□□□□ 0.479e-9■■■□□ 17.1
UPF1Q92900 GOSR2-214ENST00000638219 1425 ntTSL 516.71■□□□□ 0.279e-9■■■□□ 17.1
UPF1Q92900 GOSR2-227ENST00000639365 1584 ntTSL 515.71■□□□□ 0.119e-9■■■□□ 17.1
UPF1Q92900 GOSR2-246ENST00000640866 1973 ntTSL 515.22■□□□□ 0.039e-9■■■□□ 17.1
UPF1Q92900 GOSR2-212ENST00000638189 1945 ntTSL 515□□□□□ -0.019e-9■■■□□ 17.1
UPF1Q92900 GOSR2-216ENST00000638468 1788 ntTSL 514.97□□□□□ -0.019e-9■■■□□ 17.1
UPF1Q92900 GOSR2-207ENST00000572403 648 ntTSL 513.93□□□□□ -0.189e-9■■■□□ 17.1
UPF1Q92900 GOSR2-230ENST00000639985 1618 ntTSL 513.92□□□□□ -0.189e-9■■■□□ 17.1
UPF1Q92900 GOSR2-243ENST00000640723 941 ntTSL 513.61□□□□□ -0.239e-9■■■□□ 17.1
UPF1Q92900 GOSR2-217ENST00000638579 1273 ntTSL 512.19□□□□□ -0.469e-9■■■□□ 17.1
UPF1Q92900 AC005670.2-202ENST00000639822 1564 ntTSL 511.5□□□□□ -0.579e-9■■■□□ 17.1
UPF1Q92900 GOSR2-239ENST00000640608 3871 ntTSL 2 BASIC11.3□□□□□ -0.69e-9■■■□□ 17.1
UPF1Q92900 GOSR2-229ENST00000639713 622 ntTSL 510.88□□□□□ -0.679e-9■■■□□ 17.1
UPF1Q92900 GOSR2-232ENST00000640051 3964 ntAPPRIS P2 TSL 1 (best) BASIC10.09□□□□□ -0.799e-9■■■□□ 17.1
UPF1Q92900 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC8.81□□□□□ -19e-9■■■□□ 17.1
UPF1Q92900 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.119e-9■■■□□ 17.1
UPF1Q92900 MED1-202ENST00000394287 2870 ntTSL 1 (best) BASIC8.56□□□□□ -1.041e-6■■■□□ 17.1
UPF1Q92900 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.37□□□□□ -1.555e-7■■■□□ 17.1
UPF1Q92900 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.565e-7■■■□□ 17.1
UPF1Q92900 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.375e-8■■■□□ 17.1
Retrieved 100 of 15,879 protein–RNA pairs in 181.9 ms