Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC116Q8IYX3 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 AC005082.1-201ENST00000413042 2259 ntBASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 AL596275.1-201ENST00000423464 877 ntBASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 FITM1-202ENST00000559294 800 ntBASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 AL499627.1-201ENST00000569373 2188 ntBASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC116Q8IYX3 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 AC008556.1-201ENST00000610908 2040 ntBASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 GPAT2P1-201ENST00000444924 1672 ntBASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 AC009113.1-201ENST00000570267 2443 ntBASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.6■□□□□ 0.41
CCDC116Q8IYX3 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.59■□□□□ 0.41
CCDC116Q8IYX3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms