Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 MIR564-202ENST00000385049 94 ntBASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 AP003041.3-201ENST00000527151 707 ntBASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 AC092338.2-201ENST00000568827 1415 ntBASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 MMP23A-201ENST00000234610 1017 ntBASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 BX088651.1-201ENST00000540551 451 ntBASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 MIR4674-201ENST00000582457 87 ntBASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC65Q8IXS2 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 AL499627.1-201ENST00000569373 2188 ntBASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 TSPY14P-201ENST00000303979 915 ntBASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 EGLN1P1-201ENST00000531623 762 ntBASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 MIR3180-5-201ENST00000583743 153 ntBASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 AC005082.1-201ENST00000413042 2259 ntBASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC65Q8IXS2 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC65Q8IXS2 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC65Q8IXS2 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.7■□□□□ 0.91
CCDC65Q8IXS2 KRT8P45-201ENST00000414328 1447 ntBASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 KRT8P9-201ENST00000558927 1449 ntBASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 HCG11-201ENST00000411553 5696 ntBASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 NAPSB-206ENST00000562112 1266 ntBASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC65Q8IXS2 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 AC090164.3-201ENST00000610780 2143 ntBASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 CYP2D8P-201ENST00000433633 1490 ntBASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms