Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 C1QL1P1-201ENST00000568105 661 ntBASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 AP006294.2-201ENST00000641667 209 ntBASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 HTR7P1-201ENST00000538670 1336 ntBASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
RNF111Q6ZNA4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
RNF111Q6ZNA4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 ZNF815P-204ENST00000434898 1737 ntBASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 IRX1P1-201ENST00000438849 1838 ntBASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.14■□□□□ 0.49
RNF111Q6ZNA4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 AL353807.1-201ENST00000427475 662 ntBASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 AL135905.2-201ENST00000584934 1404 ntBASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
RNF111Q6ZNA4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF111Q6ZNA4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF111Q6ZNA4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF111Q6ZNA4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF111Q6ZNA4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF111Q6ZNA4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF111Q6ZNA4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF111Q6ZNA4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms