Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC11.55□□□□□ -0.56
HSPG2P98160 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC11.55□□□□□ -0.56
HSPG2P98160 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HSPG2P98160 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC11.55□□□□□ -0.56
HSPG2P98160 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HSPG2P98160 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HSPG2P98160 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC11.54□□□□□ -0.56
HSPG2P98160 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC11.54□□□□□ -0.56
HSPG2P98160 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HSPG2P98160 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC11.54□□□□□ -0.56
HSPG2P98160 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
HSPG2P98160 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC11.54□□□□□ -0.56
HSPG2P98160 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC11.54□□□□□ -0.56
HSPG2P98160 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC11.54□□□□□ -0.56
HSPG2P98160 AC064836.3-201ENST00000607928 673 ntBASIC11.54□□□□□ -0.56
HSPG2P98160 AL035252.4-201ENST00000624174 288 ntBASIC11.54□□□□□ -0.56
HSPG2P98160 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HSPG2P98160 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HSPG2P98160 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC11.54□□□□□ -0.56
HSPG2P98160 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
HSPG2P98160 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
HSPG2P98160 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC11.54□□□□□ -0.56
HSPG2P98160 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HSPG2P98160 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC11.54□□□□□ -0.56
HSPG2P98160 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC11.54□□□□□ -0.56
HSPG2P98160 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HSPG2P98160 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC11.54□□□□□ -0.56
HSPG2P98160 COX5A-206ENST00000568783 571 ntTSL 3 BASIC11.54□□□□□ -0.56
HSPG2P98160 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC11.54□□□□□ -0.56
HSPG2P98160 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC11.54□□□□□ -0.56
HSPG2P98160 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HSPG2P98160 HLA-J-201ENST00000462773 1622 ntBASIC11.54□□□□□ -0.56
HSPG2P98160 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HSPG2P98160 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HSPG2P98160 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
HSPG2P98160 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC11.54□□□□□ -0.56
HSPG2P98160 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC11.54□□□□□ -0.56
HSPG2P98160 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC11.54□□□□□ -0.56
HSPG2P98160 INO80C-206ENST00000586489 594 ntTSL 3 BASIC11.54□□□□□ -0.56
HSPG2P98160 AL109659.2-201ENST00000606809 1674 ntBASIC11.54□□□□□ -0.56
HSPG2P98160 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC11.54□□□□□ -0.56
HSPG2P98160 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC11.54□□□□□ -0.56
HSPG2P98160 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
HSPG2P98160 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HSPG2P98160 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
HSPG2P98160 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
HSPG2P98160 PTMS-202ENST00000389462 773 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 METTL26-204ENST00000397665 558 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 SNHG9-202ENST00000564014 471 ntBASIC11.53□□□□□ -0.56
HSPG2P98160 AL390955.2-201ENST00000603032 514 ntBASIC11.53□□□□□ -0.56
HSPG2P98160 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC11.53□□□□□ -0.56
HSPG2P98160 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
HSPG2P98160 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC11.53□□□□□ -0.56
HSPG2P98160 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
HSPG2P98160 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC11.53□□□□□ -0.56
HSPG2P98160 AC011467.4-201ENST00000594891 528 ntBASIC11.53□□□□□ -0.56
HSPG2P98160 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 AC009237.14-201ENST00000609975 1594 ntBASIC11.53□□□□□ -0.56
HSPG2P98160 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC11.53□□□□□ -0.56
HSPG2P98160 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 AC011840.4-201ENST00000578471 627 ntBASIC11.53□□□□□ -0.56
HSPG2P98160 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 AL138831.2-201ENST00000606564 490 ntBASIC11.53□□□□□ -0.56
HSPG2P98160 AC093028.1-201ENST00000622998 982 ntBASIC11.53□□□□□ -0.56
HSPG2P98160 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC11.53□□□□□ -0.56
HSPG2P98160 EP400NL-214ENST00000641289 2402 ntBASIC11.53□□□□□ -0.56
HSPG2P98160 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC11.53□□□□□ -0.56
HSPG2P98160 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
HSPG2P98160 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC11.53□□□□□ -0.56
HSPG2P98160 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC11.53□□□□□ -0.56
HSPG2P98160 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC11.53□□□□□ -0.56
HSPG2P98160 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
HSPG2P98160 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC11.53□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms