Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL162741.1-201ENST00000565563 1558 ntBASIC18.11■□□□□ 0.49
FOXA1P55317 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA1P55317 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA1P55317 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.11■□□□□ 0.49
FOXA1P55317 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA1P55317 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
FOXA1P55317 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.1■□□□□ 0.49
FOXA1P55317 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.1■□□□□ 0.49
FOXA1P55317 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
FOXA1P55317 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.1■□□□□ 0.49
FOXA1P55317 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.1■□□□□ 0.49
FOXA1P55317 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
FOXA1P55317 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
FOXA1P55317 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.1■□□□□ 0.49
FOXA1P55317 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
FOXA1P55317 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.1■□□□□ 0.49
FOXA1P55317 CD99P1-205ENST00000527459 561 ntBASIC18.1■□□□□ 0.49
FOXA1P55317 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
FOXA1P55317 CKBP1-201ENST00000565489 1086 ntBASIC18.1■□□□□ 0.49
FOXA1P55317 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.1■□□□□ 0.49
FOXA1P55317 AF186192.3-201ENST00000583427 947 ntBASIC18.1■□□□□ 0.49
FOXA1P55317 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.1■□□□□ 0.49
FOXA1P55317 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
FOXA1P55317 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.1■□□□□ 0.49
FOXA1P55317 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA1P55317 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.1■□□□□ 0.49
FOXA1P55317 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.09■□□□□ 0.49
FOXA1P55317 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.09■□□□□ 0.49
FOXA1P55317 KRT8P45-201ENST00000414328 1447 ntBASIC18.09■□□□□ 0.49
FOXA1P55317 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.09■□□□□ 0.49
FOXA1P55317 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.09■□□□□ 0.49
FOXA1P55317 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.09■□□□□ 0.49
FOXA1P55317 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.09■□□□□ 0.49
FOXA1P55317 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 AC130371.2-201ENST00000619443 611 ntBASIC18.09■□□□□ 0.49
FOXA1P55317 AL031985.4-201ENST00000642138 673 ntBASIC18.09■□□□□ 0.49
FOXA1P55317 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
FOXA1P55317 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
FOXA1P55317 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.09■□□□□ 0.49
FOXA1P55317 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA1P55317 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.08■□□□□ 0.49
FOXA1P55317 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA1P55317 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
FOXA1P55317 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA1P55317 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA1P55317 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA1P55317 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.08■□□□□ 0.48
FOXA1P55317 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
FOXA1P55317 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
FOXA1P55317 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 AL353807.1-201ENST00000427475 662 ntBASIC18.08■□□□□ 0.48
FOXA1P55317 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXA1P55317 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.08■□□□□ 0.48
FOXA1P55317 AC026271.3-201ENST00000571884 352 ntBASIC18.08■□□□□ 0.48
FOXA1P55317 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXA1P55317 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
FOXA1P55317 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.08■□□□□ 0.48
FOXA1P55317 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
FOXA1P55317 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.08■□□□□ 0.48
FOXA1P55317 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
FOXA1P55317 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA1P55317 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.07■□□□□ 0.48
FOXA1P55317 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms