Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
RPA3P35244 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.9■□□□□ 0.62
RPA3P35244 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
RPA3P35244 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.9■□□□□ 0.62
RPA3P35244 AC098590.1-201ENST00000468126 897 ntBASIC18.9■□□□□ 0.62
RPA3P35244 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.9■□□□□ 0.62
RPA3P35244 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.9■□□□□ 0.62
RPA3P35244 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.9■□□□□ 0.62
RPA3P35244 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPA3P35244 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
RPA3P35244 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
RPA3P35244 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.89■□□□□ 0.62
RPA3P35244 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.62
RPA3P35244 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
RPA3P35244 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
RPA3P35244 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
RPA3P35244 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.89■□□□□ 0.61
RPA3P35244 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.89■□□□□ 0.61
RPA3P35244 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RPA3P35244 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.89■□□□□ 0.61
RPA3P35244 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RPA3P35244 GCSHP5-201ENST00000443090 522 ntBASIC18.89■□□□□ 0.61
RPA3P35244 KRT16P5-201ENST00000455284 522 ntBASIC18.89■□□□□ 0.61
RPA3P35244 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.89■□□□□ 0.61
RPA3P35244 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.89■□□□□ 0.61
RPA3P35244 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.89■□□□□ 0.61
RPA3P35244 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.89■□□□□ 0.61
RPA3P35244 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RPA3P35244 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.89■□□□□ 0.61
RPA3P35244 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
RPA3P35244 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPA3P35244 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.89■□□□□ 0.61
RPA3P35244 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
RPA3P35244 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.88■□□□□ 0.61
RPA3P35244 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.88■□□□□ 0.61
RPA3P35244 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.88■□□□□ 0.61
RPA3P35244 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.88■□□□□ 0.61
RPA3P35244 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.88■□□□□ 0.61
RPA3P35244 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.88■□□□□ 0.61
RPA3P35244 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
RPA3P35244 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
RPA3P35244 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.88■□□□□ 0.61
RPA3P35244 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
RPA3P35244 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.88■□□□□ 0.61
RPA3P35244 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
RPA3P35244 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPA3P35244 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
RPA3P35244 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
RPA3P35244 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
RPA3P35244 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
RPA3P35244 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.87■□□□□ 0.61
RPA3P35244 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms