Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CIITAP33076 SPDYE15P-201ENST00000424157 909 ntBASIC21.05■□□□□ 0.96
CIITAP33076 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.05■□□□□ 0.96
CIITAP33076 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.05■□□□□ 0.96
CIITAP33076 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CIITAP33076 AC010240.3-201ENST00000607688 395 ntBASIC21.05■□□□□ 0.96
CIITAP33076 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CIITAP33076 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.05■□□□□ 0.96
CIITAP33076 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CIITAP33076 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CIITAP33076 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.05■□□□□ 0.96
CIITAP33076 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CIITAP33076 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CIITAP33076 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CIITAP33076 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
CIITAP33076 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 AC092647.4-201ENST00000457211 535 ntBASIC21.04■□□□□ 0.96
CIITAP33076 RASA4DP-201ENST00000460726 1199 ntBASIC21.04■□□□□ 0.96
CIITAP33076 KRT18P35-201ENST00000510488 1269 ntBASIC21.04■□□□□ 0.96
CIITAP33076 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.04■□□□□ 0.96
CIITAP33076 AL445228.2-201ENST00000605589 952 ntBASIC21.04■□□□□ 0.96
CIITAP33076 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 HYMAI.1-201ENST00000620949 238 ntBASIC21.04■□□□□ 0.96
CIITAP33076 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.04■□□□□ 0.96
CIITAP33076 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.04■□□□□ 0.96
CIITAP33076 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
CIITAP33076 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CIITAP33076 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CIITAP33076 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.04■□□□□ 0.96
CIITAP33076 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CIITAP33076 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CIITAP33076 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.04■□□□□ 0.96
CIITAP33076 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CIITAP33076 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CIITAP33076 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.03■□□□□ 0.96
CIITAP33076 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.03■□□□□ 0.96
CIITAP33076 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.03■□□□□ 0.96
CIITAP33076 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.03■□□□□ 0.96
CIITAP33076 AC034232.1-201ENST00000506026 1064 ntBASIC21.03■□□□□ 0.96
CIITAP33076 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.03■□□□□ 0.96
CIITAP33076 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CIITAP33076 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.03■□□□□ 0.96
CIITAP33076 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CIITAP33076 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CIITAP33076 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CIITAP33076 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CIITAP33076 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CIITAP33076 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.03■□□□□ 0.96
CIITAP33076 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CIITAP33076 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC21.02■□□□□ 0.96
CIITAP33076 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.02■□□□□ 0.96
CIITAP33076 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.02■□□□□ 0.96
CIITAP33076 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CIITAP33076 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CIITAP33076 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
CIITAP33076 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CIITAP33076 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.02■□□□□ 0.96
CIITAP33076 AL359075.1-203ENST00000462729 1002 ntBASIC21.02■□□□□ 0.96
CIITAP33076 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CIITAP33076 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CIITAP33076 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.02■□□□□ 0.96
CIITAP33076 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CIITAP33076 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CIITAP33076 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CIITAP33076 AC112777.1-201ENST00000540175 1423 ntBASIC21.02■□□□□ 0.96
CIITAP33076 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
CIITAP33076 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CIITAP33076 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.02■□□□□ 0.95
CIITAP33076 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CIITAP33076 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CIITAP33076 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
CIITAP33076 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.95
CIITAP33076 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CIITAP33076 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CIITAP33076 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CIITAP33076 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CIITAP33076 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CIITAP33076 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CIITAP33076 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.01■□□□□ 0.95
CIITAP33076 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.01■□□□□ 0.95
CIITAP33076 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.01■□□□□ 0.95
CIITAP33076 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.01■□□□□ 0.95
CIITAP33076 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
CIITAP33076 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CIITAP33076 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.01■□□□□ 0.95
CIITAP33076 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CIITAP33076 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
CIITAP33076 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CIITAP33076 ANO7L1-203ENST00000602586 1720 ntBASIC21.01■□□□□ 0.95
CIITAP33076 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CIITAP33076 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms