Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 CD276-201ENST00000318424 2738 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 MIR718-201ENST00000390190 70 ntBASIC14.25□□□□□ -0.13
HLA-DMBP28068 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DMBP28068 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DMBP28068 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 KRT16P5-201ENST00000455284 522 ntBASIC14.24□□□□□ -0.13
HLA-DMBP28068 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 AC124016.1-201ENST00000609552 612 ntBASIC14.24□□□□□ -0.13
HLA-DMBP28068 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 RCC2P6-201ENST00000526625 1557 ntBASIC14.24□□□□□ -0.13
HLA-DMBP28068 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 MADD-208ENST00000405573 1823 ntTSL 5 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DMBP28068 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DMBP28068 KRT8P11-201ENST00000409686 1436 ntBASIC14.24□□□□□ -0.13
HLA-DMBP28068 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms