Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.82■□□□□ 0.44
SDC1P18827 KRT18P29-201ENST00000397031 1267 ntBASIC17.82■□□□□ 0.44
SDC1P18827 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SDC1P18827 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.82■□□□□ 0.44
SDC1P18827 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.82■□□□□ 0.44
SDC1P18827 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SDC1P18827 AP000692.2-201ENST00000608391 879 ntBASIC17.82■□□□□ 0.44
SDC1P18827 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.82■□□□□ 0.44
SDC1P18827 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.82■□□□□ 0.44
SDC1P18827 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SDC1P18827 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDC1P18827 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.82■□□□□ 0.44
SDC1P18827 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SDC1P18827 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.81■□□□□ 0.44
SDC1P18827 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.81■□□□□ 0.44
SDC1P18827 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
SDC1P18827 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.81■□□□□ 0.44
SDC1P18827 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.81■□□□□ 0.44
SDC1P18827 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.81■□□□□ 0.44
SDC1P18827 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.81■□□□□ 0.44
SDC1P18827 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.81■□□□□ 0.44
SDC1P18827 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.81■□□□□ 0.44
SDC1P18827 CD177P1-201ENST00000606252 935 ntBASIC17.81■□□□□ 0.44
SDC1P18827 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.81■□□□□ 0.44
SDC1P18827 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.81■□□□□ 0.44
SDC1P18827 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.81■□□□□ 0.44
SDC1P18827 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.81■□□□□ 0.44
SDC1P18827 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
SDC1P18827 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SDC1P18827 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
SDC1P18827 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SDC1P18827 AL135905.2-201ENST00000584934 1404 ntBASIC17.81■□□□□ 0.44
SDC1P18827 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SDC1P18827 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SDC1P18827 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 AL133373.2-201ENST00000623187 2828 ntBASIC17.8■□□□□ 0.44
SDC1P18827 PRORSD1P-201ENST00000295112 541 ntBASIC17.8■□□□□ 0.44
SDC1P18827 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.8■□□□□ 0.44
SDC1P18827 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
SDC1P18827 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.8■□□□□ 0.44
SDC1P18827 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SDC1P18827 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC1P18827 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.8■□□□□ 0.44
SDC1P18827 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.79■□□□□ 0.44
SDC1P18827 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC1P18827 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SDC1P18827 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.79■□□□□ 0.44
SDC1P18827 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDC1P18827 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.79■□□□□ 0.44
SDC1P18827 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.79■□□□□ 0.44
SDC1P18827 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDC1P18827 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC1P18827 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC1P18827 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.79■□□□□ 0.44
SDC1P18827 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.79■□□□□ 0.44
SDC1P18827 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC1P18827 AC008622.2-201ENST00000617006 1229 ntBASIC17.79■□□□□ 0.44
SDC1P18827 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC1P18827 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDC1P18827 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC1P18827 AL109659.2-201ENST00000606809 1674 ntBASIC17.79■□□□□ 0.44
SDC1P18827 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms