Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DYRK1A-206ENST00000455097 338 ntTSL 1 (best)14.15□□□□□ -0.144e-9■■□□□ 13.7
YBX3P16989 DYRK1A-205ENST00000426672 519 ntTSL 55.36□□□□□ -1.554e-9■■□□□ 13.7
YBX3P16989 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.46e-36■■□□□ 13.7
YBX3P16989 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.876e-36■■□□□ 13.7
YBX3P16989 NDUFAB1-203ENST00000562133 503 ntTSL 219.84■□□□□ 0.776e-36■■□□□ 13.7
YBX3P16989 NDUFAB1-202ENST00000484769 843 ntTSL 316.87■□□□□ 0.296e-36■■□□□ 13.7
YBX3P16989 RPLP0-216ENST00000550296 562 ntTSL 216.84■□□□□ 0.293e-88■■□□□ 13.7
YBX3P16989 CNN2-203ENST00000562015 563 ntTSL 419.36■□□□□ 0.692e-7■■□□□ 13.7
YBX3P16989 JPT1-210ENST00000580380 411 ntTSL 518.13■□□□□ 0.499e-13■■□□□ 13.7
YBX3P16989 JPT1-212ENST00000584079 382 ntTSL 511.55□□□□□ -0.569e-13■■□□□ 13.7
YBX3P16989 JPT1-211ENST00000581874 517 ntTSL 5 BASIC10.92□□□□□ -0.669e-13■■□□□ 13.7
YBX3P16989 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.153e-8■■□□□ 13.7
YBX3P16989 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.943e-8■■□□□ 13.7
YBX3P16989 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.933e-8■■□□□ 13.7
YBX3P16989 SUSD1-201ENST00000355396 2861 ntAPPRIS ALT2 TSL 214.32□□□□□ -0.123e-8■■□□□ 13.7
YBX3P16989 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.316e-12■■□□□ 13.7
YBX3P16989 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.87□□□□□ -1.153e-6■■□□□ 13.7
YBX3P16989 PSMD4-211ENST00000476855 1232 ntTSL 220.64■□□□□ 0.895e-11■■□□□ 13.7
YBX3P16989 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.41■□□□□ 0.865e-11■■□□□ 13.7
YBX3P16989 PSMD4-202ENST00000368884 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.065e-11■■□□□ 13.7
YBX3P16989 PSMD4-204ENST00000437736 787 ntTSL 512.83□□□□□ -0.365e-11■■□□□ 13.7
YBX3P16989 PSMD4-208ENST00000462970 900 ntTSL 512.38□□□□□ -0.435e-11■■□□□ 13.7
YBX3P16989 EWSR1-205ENST00000360091 1289 ntTSL 526.06■■□□□ 1.763e-13■■□□□ 13.7
YBX3P16989 EWSR1-218ENST00000483629 1818 ntTSL 520.57■□□□□ 0.883e-13■■□□□ 13.7
YBX3P16989 EWSR1-221ENST00000610553 2300 ntTSL 217.33■□□□□ 0.363e-13■■□□□ 13.7
YBX3P16989 EWSR1-215ENST00000469669 2630 ntTSL 216.87■□□□□ 0.293e-13■■□□□ 13.7
YBX3P16989 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC13.66□□□□□ -0.221e-6■■□□□ 13.7
YBX3P16989 PPP6C-202ENST00000415905 4172 ntTSL 2 BASIC12.87□□□□□ -0.351e-6■■□□□ 13.7
YBX3P16989 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.021e-6■■□□□ 13.7
YBX3P16989 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.95■■■□□ 2.228e-10■■□□□ 13.7
YBX3P16989 TAF9-203ENST00000503245 966 ntAPPRIS ALT2 TSL 528.38■■■□□ 2.138e-10■■□□□ 13.7
YBX3P16989 AK6-201ENST00000380818 1183 ntTSL 2 BASIC18.6■□□□□ 0.578e-10■■□□□ 13.7
YBX3P16989 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.48e-10■■□□□ 13.7
YBX3P16989 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.368e-10■■□□□ 13.7
YBX3P16989 AK6-204ENST00000512561 587 ntTSL 5 BASIC11.22□□□□□ -0.618e-10■■□□□ 13.7
YBX3P16989 AK6-203ENST00000502819 743 ntTSL 5 BASIC10.59□□□□□ -0.718e-10■■□□□ 13.7
YBX3P16989 AK6-205ENST00000618980 483 ntTSL 2 BASIC7.76□□□□□ -1.178e-10■■□□□ 13.7
YBX3P16989 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.38e-10■■□□□ 13.7
YBX3P16989 TAF8-206ENST00000472818 719 ntTSL 2 BASIC22.61■■□□□ 1.215e-9■■□□□ 13.7
YBX3P16989 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.925e-9■■□□□ 13.7
YBX3P16989 TAF8-208ENST00000482926 1066 ntTSL 318.27■□□□□ 0.525e-9■■□□□ 13.7
YBX3P16989 TAF8-209ENST00000486070 480 ntTSL 217.39■□□□□ 0.375e-9■■□□□ 13.7
YBX3P16989 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.39■□□□□ 0.375e-9■■□□□ 13.7
YBX3P16989 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.07■□□□□ 05e-9■■□□□ 13.7
YBX3P16989 TAF8-205ENST00000465926 1222 ntTSL 2 BASIC12.81□□□□□ -0.365e-9■■□□□ 13.7
YBX3P16989 TAF8-210ENST00000494547 2402 ntTSL 5 BASIC11.28□□□□□ -0.65e-9■■□□□ 13.7
YBX3P16989 TAF8-201ENST00000372977 6680 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.725e-9■■□□□ 13.7
YBX3P16989 TAF8-207ENST00000482432 556 ntTSL 2 BASIC6.39□□□□□ -1.395e-9■■□□□ 13.7
YBX3P16989 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.751e-10■■□□□ 13.6
YBX3P16989 MPC2-203ENST00000458574 645 ntTSL 525.09■■□□□ 1.611e-10■■□□□ 13.6
YBX3P16989 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.241e-10■■□□□ 13.6
YBX3P16989 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.466e-11■■□□□ 13.6
YBX3P16989 DAP-205ENST00000510546 780 ntTSL 223.31■■□□□ 1.325e-6■■□□□ 13.6
YBX3P16989 MRPL24-203ENST00000412846 514 ntTSL 319.82■□□□□ 0.766e-11■■□□□ 13.6
YBX3P16989 MRPL24-205ENST00000434558 990 ntTSL 516.08■□□□□ 0.166e-11■■□□□ 13.6
YBX3P16989 MRPL24-201ENST00000361531 883 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.076e-11■■□□□ 13.6
YBX3P16989 MRPL24-204ENST00000420938 448 ntTSL 311.71□□□□□ -0.536e-11■■□□□ 13.6
YBX3P16989 CDC42BPA-208ENST00000442054 3786 ntTSL 1 (best)8.94□□□□□ -0.984e-6■■□□□ 13.6
YBX3P16989 VPS35-211ENST00000569950 1096 ntTSL 511.66□□□□□ -0.541e-6■■□□□ 13.6
YBX3P16989 NAGA-203ENST00000403363 1856 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.344e-6■■□□□ 13.6
YBX3P16989 NAGA-202ENST00000402937 1869 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.344e-6■■□□□ 13.6
YBX3P16989 PAPOLA-209ENST00000554666 558 ntTSL 26.99□□□□□ -1.292e-6■■□□□ 13.6
YBX3P16989 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC26.06■■□□□ 1.768e-12■■□□□ 13.6
YBX3P16989 ACP1-208ENST00000442386 546 ntTSL 426.06■■□□□ 1.768e-12■■□□□ 13.6
YBX3P16989 ACP1-207ENST00000439645 605 ntTSL 2 BASIC16.41■□□□□ 0.228e-12■■□□□ 13.6
YBX3P16989 ACP1-204ENST00000405364 414 ntTSL 516.26■□□□□ 0.198e-12■■□□□ 13.6
YBX3P16989 ACP1-206ENST00000413140 689 ntTSL 215.72■□□□□ 0.118e-12■■□□□ 13.6
YBX3P16989 ACP1-211ENST00000480874 732 ntTSL 214.72□□□□□ -0.058e-12■■□□□ 13.6
YBX3P16989 ACP1-209ENST00000453390 577 ntTSL 1 (best)14.04□□□□□ -0.168e-12■■□□□ 13.6
YBX3P16989 ACP1-213ENST00000484464 573 ntTSL 411.98□□□□□ -0.498e-12■■□□□ 13.6
YBX3P16989 ACP1-203ENST00000405233 1149 ntTSL 1 (best) BASIC11.29□□□□□ -0.68e-12■■□□□ 13.6
YBX3P16989 RPLP0-218ENST00000550856 1003 ntTSL 222.62■■□□□ 1.212e-88■■□□□ 13.6
YBX3P16989 ZNF317-202ENST00000360385 3955 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.91e-6■■□□□ 13.6
YBX3P16989 ZNF317-206ENST00000591508 457 ntTSL 59.24□□□□□ -0.931e-6■■□□□ 13.6
YBX3P16989 ZNF317-201ENST00000247956 4073 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.041e-6■■□□□ 13.6
YBX3P16989 ZNF317-205ENST00000591278 4186 ntTSL 1 (best)6.84□□□□□ -1.311e-6■■□□□ 13.6
YBX3P16989 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.725e-6■■□□□ 13.6
YBX3P16989 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.495e-6■■□□□ 13.6
YBX3P16989 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.435e-6■■□□□ 13.6
YBX3P16989 LTBP4-202ENST00000243562 3140 ntTSL 214.39□□□□□ -0.115e-6■■□□□ 13.6
YBX3P16989 BCR-212ENST00000479188 658 ntTSL 418.95■□□□□ 0.624e-11■■□□□ 13.6
YBX3P16989 BCR-207ENST00000463770 168 ntTSL 1 (best)18.3■□□□□ 0.524e-11■■□□□ 13.6
YBX3P16989 BCR-214ENST00000487679 231 ntTSL 1 (best)11.44□□□□□ -0.584e-11■■□□□ 13.6
YBX3P16989 USP32-202ENST00000393003 1868 ntTSL 1 (best) BASIC14.23□□□□□ -0.135e-6■■□□□ 13.6
YBX3P16989 TRIM24-205ENST00000493595 811 ntTSL 36.69□□□□□ -1.342e-9■■□□□ 13.6
YBX3P16989 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC27.68■■■□□ 2.027e-6■■□□□ 13.6
YBX3P16989 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC19.14■□□□□ 0.657e-6■■□□□ 13.6
YBX3P16989 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.527e-6■■□□□ 13.6
YBX3P16989 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC17.93■□□□□ 0.467e-6■■□□□ 13.6
YBX3P16989 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.92■□□□□ 0.465e-6■■□□□ 13.6
YBX3P16989 DHX33-203ENST00000572490 2564 ntTSL 1 (best)17.55■□□□□ 0.45e-6■■□□□ 13.6
YBX3P16989 TRAPPC2L-209ENST00000565205 1084 ntTSL 1 (best)17.45■□□□□ 0.387e-6■■□□□ 13.6
YBX3P16989 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.365e-6■■□□□ 13.6
YBX3P16989 TRAPPC2L-210ENST00000565309 699 ntTSL 316.69■□□□□ 0.267e-6■■□□□ 13.6
YBX3P16989 TRAPPC2L-207ENST00000564404 915 ntTSL 316.13■□□□□ 0.177e-6■■□□□ 13.6
YBX3P16989 TRAPPC2L-214ENST00000568583 801 ntTSL 3 BASIC15.67■□□□□ 0.17e-6■■□□□ 13.6
YBX3P16989 TRAPPC2L-202ENST00000561840 558 ntTSL 5 BASIC15.62■□□□□ 0.097e-6■■□□□ 13.6
YBX3P16989 TRAPPC2L-211ENST00000565504 3102 ntTSL 2 BASIC12.99□□□□□ -0.337e-6■■□□□ 13.6
YBX3P16989 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.812e-48■■□□□ 13.6
YBX3P16989 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.72e-48■■□□□ 13.6
Retrieved 100 of 29,075 protein–RNA pairs in 359.2 ms