Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
MT-ND1P03886 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.64■□□□□ 0.41
MT-ND1P03886 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.64■□□□□ 0.41
MT-ND1P03886 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.64■□□□□ 0.41
MT-ND1P03886 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.64■□□□□ 0.41
MT-ND1P03886 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.64■□□□□ 0.41
MT-ND1P03886 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
MT-ND1P03886 AL138781.1-201ENST00000566567 1274 ntBASIC17.64■□□□□ 0.41
MT-ND1P03886 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.64■□□□□ 0.41
MT-ND1P03886 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.64■□□□□ 0.41
MT-ND1P03886 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.64■□□□□ 0.41
MT-ND1P03886 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.64■□□□□ 0.41
MT-ND1P03886 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MT-ND1P03886 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.63■□□□□ 0.41
MT-ND1P03886 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.63■□□□□ 0.41
MT-ND1P03886 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.63■□□□□ 0.41
MT-ND1P03886 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.63■□□□□ 0.41
MT-ND1P03886 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
MT-ND1P03886 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.63■□□□□ 0.41
MT-ND1P03886 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.63■□□□□ 0.41
MT-ND1P03886 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.63■□□□□ 0.41
MT-ND1P03886 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.63■□□□□ 0.41
MT-ND1P03886 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
MT-ND1P03886 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.63■□□□□ 0.41
MT-ND1P03886 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.63■□□□□ 0.41
MT-ND1P03886 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
MT-ND1P03886 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.63■□□□□ 0.41
MT-ND1P03886 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.63■□□□□ 0.41
MT-ND1P03886 AC083880.1-201ENST00000608266 535 ntBASIC17.63■□□□□ 0.41
MT-ND1P03886 AL109923.1-201ENST00000618799 583 ntBASIC17.63■□□□□ 0.41
MT-ND1P03886 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.63■□□□□ 0.41
MT-ND1P03886 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 AC099398.1-201ENST00000567919 2776 ntBASIC17.63■□□□□ 0.41
MT-ND1P03886 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
MT-ND1P03886 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 AC135776.1-201ENST00000319817 2481 ntBASIC17.63■□□□□ 0.41
MT-ND1P03886 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.63■□□□□ 0.41
MT-ND1P03886 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MT-ND1P03886 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.63■□□□□ 0.41
MT-ND1P03886 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.63■□□□□ 0.41
MT-ND1P03886 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.62■□□□□ 0.41
MT-ND1P03886 AC134043.2-201ENST00000624206 2238 ntBASIC17.62■□□□□ 0.41
MT-ND1P03886 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.62■□□□□ 0.41
MT-ND1P03886 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.62■□□□□ 0.41
MT-ND1P03886 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.62■□□□□ 0.41
MT-ND1P03886 AC098934.4-201ENST00000564127 592 ntBASIC17.62■□□□□ 0.41
MT-ND1P03886 AC120498.8-201ENST00000614275 531 ntBASIC17.62■□□□□ 0.41
MT-ND1P03886 AC133041.1-202ENST00000642053 222 ntBASIC17.62■□□□□ 0.41
MT-ND1P03886 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.62■□□□□ 0.41
MT-ND1P03886 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.62■□□□□ 0.41
MT-ND1P03886 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.62■□□□□ 0.41
MT-ND1P03886 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MT-ND1P03886 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MT-ND1P03886 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
MT-ND1P03886 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MT-ND1P03886 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MT-ND1P03886 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MT-ND1P03886 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MT-ND1P03886 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.61■□□□□ 0.41
MT-ND1P03886 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.61■□□□□ 0.41
MT-ND1P03886 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.61■□□□□ 0.41
MT-ND1P03886 KRT18P16-201ENST00000510337 1294 ntBASIC17.61■□□□□ 0.41
MT-ND1P03886 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.61■□□□□ 0.41
MT-ND1P03886 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.61■□□□□ 0.41
MT-ND1P03886 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.61■□□□□ 0.41
MT-ND1P03886 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.61■□□□□ 0.41
MT-ND1P03886 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms