Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
HMGB3O15347 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.06■□□□□ 0
HMGB3O15347 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
HMGB3O15347 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
HMGB3O15347 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.06■□□□□ 0
HMGB3O15347 ABALON-201ENST00000629058 1903 ntBASIC15.05■□□□□ 0
HMGB3O15347 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.05■□□□□ 0
HMGB3O15347 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HMGB3O15347 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC15.05■□□□□ 0
HMGB3O15347 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
HMGB3O15347 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 0
HMGB3O15347 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HMGB3O15347 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HMGB3O15347 BMP1-204ENST00000397814 836 ntTSL 4 BASIC15.05■□□□□ -0
HMGB3O15347 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC15.05■□□□□ -0
HMGB3O15347 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
HMGB3O15347 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
HMGB3O15347 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.05■□□□□ -0
HMGB3O15347 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.05■□□□□ -0
HMGB3O15347 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
HMGB3O15347 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB3O15347 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
HMGB3O15347 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC15.04■□□□□ -0
HMGB3O15347 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC15.04■□□□□ -0
HMGB3O15347 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC15.04■□□□□ -0
HMGB3O15347 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
HMGB3O15347 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
HMGB3O15347 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC15.04■□□□□ -0
HMGB3O15347 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC15.04■□□□□ -0
HMGB3O15347 PEMT-206ENST00000435340 960 ntTSL 5 BASIC15.04■□□□□ -0
HMGB3O15347 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC15.04■□□□□ -0
HMGB3O15347 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC15.04■□□□□ -0
HMGB3O15347 MFSD11-216ENST00000590393 1141 ntBASIC15.04■□□□□ -0
HMGB3O15347 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
HMGB3O15347 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
HMGB3O15347 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.04■□□□□ -0
HMGB3O15347 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HMGB3O15347 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.03■□□□□ -0
HMGB3O15347 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 ANO7L1-203ENST00000602586 1720 ntBASIC15.03■□□□□ -0
HMGB3O15347 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.03■□□□□ -0
HMGB3O15347 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.03■□□□□ -0
HMGB3O15347 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
HMGB3O15347 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HMGB3O15347 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HMGB3O15347 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HMGB3O15347 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC15.03■□□□□ -0
HMGB3O15347 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 SUDS3P1-201ENST00000505831 966 ntBASIC15.03■□□□□ -0
HMGB3O15347 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC15.03■□□□□ -0
HMGB3O15347 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 MYCNOS-205ENST00000641950 531 ntBASIC15.03■□□□□ -0
HMGB3O15347 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 SDHAP1-207ENST00000440850 2000 ntBASIC15.03■□□□□ -0
HMGB3O15347 AC099398.1-201ENST00000567919 2776 ntBASIC15.03■□□□□ -0
HMGB3O15347 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HMGB3O15347 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HMGB3O15347 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.03■□□□□ -0
HMGB3O15347 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms