Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.61□□□□□ -0.07
TRAV1-1A0A0B4J248 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 YBX1P10-201ENST00000444752 975 ntBASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 MOK-233ENST00000524214 1539 ntTSL 2 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 RCC2P6-201ENST00000526625 1557 ntBASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRAV1-1A0A0B4J248 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 PARP1-202ENST00000366792 553 ntTSL 3 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 HES2-205ENST00000487437 968 ntTSL 3 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 AC068587.9-201ENST00000641814 219 ntBASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 AC124283.5-201ENST00000624661 1809 ntBASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 AC046158.3-201ENST00000624947 2558 ntBASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
TRAV1-1A0A0B4J248 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRAV1-1A0A0B4J248 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRAV1-1A0A0B4J248 AC018695.7-201ENST00000624587 2492 ntBASIC14.58□□□□□ -0.07
TRAV1-1A0A0B4J248 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRAV1-1A0A0B4J248 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRAV1-1A0A0B4J248 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 KRT19P1-201ENST00000405746 1186 ntBASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 AL589743.5-201ENST00000616611 1050 ntBASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRAV1-1A0A0B4J248 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms