Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.03■□□□□ 0.32
USP43Q70EL4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
USP43Q70EL4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.03■□□□□ 0.32
USP43Q70EL4 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.03■□□□□ 0.32
USP43Q70EL4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.03■□□□□ 0.32
USP43Q70EL4 MYC-209ENST00000641252 345 ntBASIC17.03■□□□□ 0.32
USP43Q70EL4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.03■□□□□ 0.32
USP43Q70EL4 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP43Q70EL4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.02■□□□□ 0.32
USP43Q70EL4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP43Q70EL4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP43Q70EL4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP43Q70EL4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP43Q70EL4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USP43Q70EL4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.02■□□□□ 0.32
USP43Q70EL4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.02■□□□□ 0.32
USP43Q70EL4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
USP43Q70EL4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
USP43Q70EL4 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USP43Q70EL4 BX276092.2-201ENST00000417668 665 ntBASIC17.02■□□□□ 0.32
USP43Q70EL4 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
USP43Q70EL4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
USP43Q70EL4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.02■□□□□ 0.32
USP43Q70EL4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
USP43Q70EL4 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.02■□□□□ 0.32
USP43Q70EL4 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.02■□□□□ 0.32
USP43Q70EL4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP43Q70EL4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.02■□□□□ 0.31
USP43Q70EL4 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
USP43Q70EL4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP43Q70EL4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP43Q70EL4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
USP43Q70EL4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
USP43Q70EL4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP43Q70EL4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
USP43Q70EL4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP43Q70EL4 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
USP43Q70EL4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
USP43Q70EL4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP43Q70EL4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP43Q70EL4 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
USP43Q70EL4 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.02■□□□□ 0.31
USP43Q70EL4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.01■□□□□ 0.31
USP43Q70EL4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
USP43Q70EL4 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.01■□□□□ 0.31
USP43Q70EL4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.01■□□□□ 0.31
USP43Q70EL4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.01■□□□□ 0.31
USP43Q70EL4 AC093787.1-201ENST00000450396 207 ntBASIC17.01■□□□□ 0.31
USP43Q70EL4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.01■□□□□ 0.31
USP43Q70EL4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.01■□□□□ 0.31
USP43Q70EL4 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.01■□□□□ 0.31
USP43Q70EL4 RARRES2P4-201ENST00000514074 484 ntBASIC17.01■□□□□ 0.31
USP43Q70EL4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.01■□□□□ 0.31
USP43Q70EL4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
USP43Q70EL4 AC016405.3-201ENST00000607710 860 ntBASIC17.01■□□□□ 0.31
USP43Q70EL4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.01■□□□□ 0.31
USP43Q70EL4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP43Q70EL4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.01■□□□□ 0.31
USP43Q70EL4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
USP43Q70EL4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
USP43Q70EL4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USP43Q70EL4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
USP43Q70EL4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17■□□□□ 0.31
USP43Q70EL4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
USP43Q70EL4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
USP43Q70EL4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USP43Q70EL4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms