Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH12P55289 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.46■□□□□ 0.39
CDH12P55289 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH12P55289 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.46■□□□□ 0.39
CDH12P55289 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH12P55289 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
CDH12P55289 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CDH12P55289 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.46■□□□□ 0.39
CDH12P55289 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.46■□□□□ 0.39
CDH12P55289 AL160286.2-201ENST00000567150 934 ntBASIC17.46■□□□□ 0.39
CDH12P55289 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH12P55289 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH12P55289 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.46■□□□□ 0.39
CDH12P55289 AL023875.1-201ENST00000640777 796 ntBASIC17.46■□□□□ 0.39
CDH12P55289 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH12P55289 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH12P55289 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH12P55289 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.46■□□□□ 0.39
CDH12P55289 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH12P55289 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.46■□□□□ 0.38
CDH12P55289 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CDH12P55289 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CDH12P55289 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CDH12P55289 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.45■□□□□ 0.38
CDH12P55289 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.45■□□□□ 0.38
CDH12P55289 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH12P55289 AC073592.3-201ENST00000625118 1834 ntBASIC17.45■□□□□ 0.38
CDH12P55289 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CDH12P55289 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
CDH12P55289 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
CDH12P55289 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CDH12P55289 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.45■□□□□ 0.38
CDH12P55289 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH12P55289 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH12P55289 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CDH12P55289 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.45■□□□□ 0.38
CDH12P55289 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH12P55289 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.45■□□□□ 0.38
CDH12P55289 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.45■□□□□ 0.38
CDH12P55289 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.45■□□□□ 0.38
CDH12P55289 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH12P55289 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CDH12P55289 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH12P55289 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH12P55289 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CDH12P55289 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.44■□□□□ 0.38
CDH12P55289 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CDH12P55289 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH12P55289 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
CDH12P55289 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.44■□□□□ 0.38
CDH12P55289 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CDH12P55289 ESRRAP1-201ENST00000400596 1257 ntBASIC17.44■□□□□ 0.38
CDH12P55289 KRASP1-201ENST00000407852 552 ntBASIC17.44■□□□□ 0.38
CDH12P55289 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH12P55289 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.44■□□□□ 0.38
CDH12P55289 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CDH12P55289 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
CDH12P55289 LTB4R2-202ENST00000528054 3092 ntBASIC17.44■□□□□ 0.38
CDH12P55289 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH12P55289 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH12P55289 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CDH12P55289 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.44■□□□□ 0.38
CDH12P55289 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.43■□□□□ 0.38
CDH12P55289 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms