Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.32■□□□□ 0.52
SHMT2P34897 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SHMT2P34897 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.32■□□□□ 0.52
SHMT2P34897 AP003041.3-201ENST00000527151 707 ntBASIC18.32■□□□□ 0.52
SHMT2P34897 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
SHMT2P34897 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.32■□□□□ 0.52
SHMT2P34897 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
SHMT2P34897 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SHMT2P34897 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SHMT2P34897 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
SHMT2P34897 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.52
SHMT2P34897 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
SHMT2P34897 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SHMT2P34897 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.32■□□□□ 0.52
SHMT2P34897 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SHMT2P34897 LIN28AP1-201ENST00000429574 405 ntBASIC18.31■□□□□ 0.52
SHMT2P34897 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.31■□□□□ 0.52
SHMT2P34897 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.31■□□□□ 0.52
SHMT2P34897 AL512604.3-201ENST00000569583 964 ntBASIC18.31■□□□□ 0.52
SHMT2P34897 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.31■□□□□ 0.52
SHMT2P34897 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SHMT2P34897 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHMT2P34897 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.31■□□□□ 0.52
SHMT2P34897 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
SHMT2P34897 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SHMT2P34897 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.3■□□□□ 0.52
SHMT2P34897 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.3■□□□□ 0.52
SHMT2P34897 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.3■□□□□ 0.52
SHMT2P34897 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
SHMT2P34897 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SHMT2P34897 AL137013.1-201ENST00000432946 1228 ntBASIC18.3■□□□□ 0.52
SHMT2P34897 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.3■□□□□ 0.52
SHMT2P34897 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
SHMT2P34897 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SHMT2P34897 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
SHMT2P34897 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.3■□□□□ 0.52
SHMT2P34897 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.3■□□□□ 0.52
SHMT2P34897 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.3■□□□□ 0.52
SHMT2P34897 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHMT2P34897 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.3■□□□□ 0.52
SHMT2P34897 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
SHMT2P34897 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SHMT2P34897 CROCCP3-202ENST00000420820 1947 ntBASIC18.29■□□□□ 0.52
SHMT2P34897 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SHMT2P34897 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.29■□□□□ 0.52
SHMT2P34897 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.29■□□□□ 0.52
SHMT2P34897 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.29■□□□□ 0.52
SHMT2P34897 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SHMT2P34897 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHMT2P34897 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.29■□□□□ 0.52
SHMT2P34897 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms