Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL9A1P20849 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL9A1P20849 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.23■□□□□ 0.67
COL9A1P20849 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 SDHAP1-207ENST00000440850 2000 ntBASIC19.22■□□□□ 0.67
COL9A1P20849 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL9A1P20849 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.22■□□□□ 0.67
COL9A1P20849 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.22■□□□□ 0.67
COL9A1P20849 AC004832.2-201ENST00000426397 482 ntBASIC19.22■□□□□ 0.67
COL9A1P20849 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.22■□□□□ 0.67
COL9A1P20849 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.22■□□□□ 0.67
COL9A1P20849 RNF126P1-202ENST00000569893 925 ntBASIC19.22■□□□□ 0.67
COL9A1P20849 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.22■□□□□ 0.67
COL9A1P20849 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
COL9A1P20849 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL9A1P20849 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.22■□□□□ 0.67
COL9A1P20849 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.22■□□□□ 0.67
COL9A1P20849 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL9A1P20849 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.21■□□□□ 0.67
COL9A1P20849 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 STK33P1-201ENST00000423835 1218 ntBASIC19.21■□□□□ 0.67
COL9A1P20849 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL9A1P20849 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.21■□□□□ 0.67
COL9A1P20849 AC090616.6-201ENST00000582640 721 ntBASIC19.21■□□□□ 0.67
COL9A1P20849 IGHV3-41-201ENST00000613121 348 ntBASIC19.21■□□□□ 0.67
COL9A1P20849 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.21■□□□□ 0.67
COL9A1P20849 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL9A1P20849 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.21■□□□□ 0.67
COL9A1P20849 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.21■□□□□ 0.67
COL9A1P20849 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.21■□□□□ 0.67
COL9A1P20849 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 LINC01006-201ENST00000333319 2292 ntBASIC19.21■□□□□ 0.67
COL9A1P20849 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL9A1P20849 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.2■□□□□ 0.66
COL9A1P20849 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL9A1P20849 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 MIR662-201ENST00000384847 95 ntBASIC19.2■□□□□ 0.66
COL9A1P20849 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL9A1P20849 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.2■□□□□ 0.66
COL9A1P20849 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.2■□□□□ 0.66
COL9A1P20849 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 AC112907.3-201ENST00000577781 2400 ntBASIC19.2■□□□□ 0.66
COL9A1P20849 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL9A1P20849 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.19■□□□□ 0.66
COL9A1P20849 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms