Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC11.67□□□□□ -0.54
APOBP04114 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC11.67□□□□□ -0.54
APOBP04114 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
APOBP04114 TEX21P-204ENST00000641479 1693 ntBASIC11.67□□□□□ -0.54
APOBP04114 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC11.66□□□□□ -0.54
APOBP04114 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 ATP6V0CP3-201ENST00000417255 467 ntBASIC11.66□□□□□ -0.54
APOBP04114 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 AC114341.1-201ENST00000618070 349 ntBASIC11.66□□□□□ -0.54
APOBP04114 FAM197Y3-203ENST00000618346 717 ntBASIC11.66□□□□□ -0.54
APOBP04114 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
APOBP04114 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC11.66□□□□□ -0.54
APOBP04114 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC11.66□□□□□ -0.54
APOBP04114 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC11.66□□□□□ -0.54
APOBP04114 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
APOBP04114 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC11.66□□□□□ -0.54
APOBP04114 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC11.66□□□□□ -0.54
APOBP04114 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
APOBP04114 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC11.66□□□□□ -0.54
APOBP04114 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
APOBP04114 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC11.66□□□□□ -0.54
APOBP04114 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
APOBP04114 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC11.66□□□□□ -0.54
APOBP04114 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC11.66□□□□□ -0.54
APOBP04114 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
APOBP04114 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
APOBP04114 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
APOBP04114 LBH-203ENST00000404397 543 ntTSL 4 BASIC11.65□□□□□ -0.54
APOBP04114 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC11.65□□□□□ -0.54
APOBP04114 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC11.65□□□□□ -0.54
APOBP04114 DHDH-204ENST00000523250 634 ntTSL 5 BASIC11.65□□□□□ -0.54
APOBP04114 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC11.65□□□□□ -0.54
APOBP04114 RPS15-207ENST00000591032 550 ntTSL 3 BASIC11.65□□□□□ -0.54
APOBP04114 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC11.65□□□□□ -0.54
APOBP04114 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC11.65□□□□□ -0.54
APOBP04114 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC11.65□□□□□ -0.54
APOBP04114 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 ZNF259P1-201ENST00000407656 1365 ntBASIC11.65□□□□□ -0.54
APOBP04114 FAM8A3P-201ENST00000427218 844 ntBASIC11.65□□□□□ -0.54
APOBP04114 AC112482.1-201ENST00000492080 688 ntBASIC11.65□□□□□ -0.54
APOBP04114 CYGB-205ENST00000590175 830 ntTSL 3 BASIC11.65□□□□□ -0.54
APOBP04114 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC11.65□□□□□ -0.54
APOBP04114 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC11.65□□□□□ -0.54
APOBP04114 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC11.65□□□□□ -0.54
APOBP04114 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
APOBP04114 SCARNA2-201ENST00000458748 420 ntBASIC11.65□□□□□ -0.54
APOBP04114 AL356488.2-201ENST00000602755 427 ntBASIC11.65□□□□□ -0.54
APOBP04114 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC11.65□□□□□ -0.54
APOBP04114 RCC2P3-201ENST00000418112 1537 ntBASIC11.65□□□□□ -0.54
APOBP04114 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC11.65□□□□□ -0.54
APOBP04114 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC11.65□□□□□ -0.54
APOBP04114 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
APOBP04114 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC11.65□□□□□ -0.55
APOBP04114 RNA5SP415-201ENST00000517246 115 ntBASIC11.65□□□□□ -0.55
APOBP04114 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC11.64□□□□□ -0.55
APOBP04114 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
APOBP04114 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
APOBP04114 UNC93B6-202ENST00000528242 690 ntBASIC11.64□□□□□ -0.55
APOBP04114 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC11.64□□□□□ -0.55
APOBP04114 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC11.64□□□□□ -0.55
APOBP04114 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
APOBP04114 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
APOBP04114 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
APOBP04114 MED16-201ENST00000269814 1199 ntTSL 5 BASIC11.64□□□□□ -0.55
APOBP04114 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
APOBP04114 HS6ST1P1-201ENST00000481504 1234 ntBASIC11.64□□□□□ -0.55
APOBP04114 AC093909.1-201ENST00000504731 1122 ntBASIC11.64□□□□□ -0.55
APOBP04114 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC11.64□□□□□ -0.55
APOBP04114 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC11.64□□□□□ -0.55
APOBP04114 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms