Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
CLDN9O95484 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CLDN9O95484 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
CLDN9O95484 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN9O95484 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN9O95484 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
CLDN9O95484 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.12■□□□□ 0.49
CLDN9O95484 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN9O95484 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CLDN9O95484 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.12■□□□□ 0.49
CLDN9O95484 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CLDN9O95484 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN9O95484 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN9O95484 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN9O95484 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN9O95484 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CLDN9O95484 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.12■□□□□ 0.49
CLDN9O95484 AL357033.4-201ENST00000617703 1807 ntBASIC18.12■□□□□ 0.49
CLDN9O95484 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN9O95484 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CLDN9O95484 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 ABHD17AP1-201ENST00000358206 933 ntBASIC18.11■□□□□ 0.49
CLDN9O95484 AC012618.2-201ENST00000428058 849 ntBASIC18.11■□□□□ 0.49
CLDN9O95484 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.11■□□□□ 0.49
CLDN9O95484 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.11■□□□□ 0.49
CLDN9O95484 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.11■□□□□ 0.49
CLDN9O95484 DGCR10-201ENST00000609839 495 ntBASIC18.11■□□□□ 0.49
CLDN9O95484 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN9O95484 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN9O95484 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CLDN9O95484 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN9O95484 AC079598.2-202ENST00000546624 1451 ntBASIC18.11■□□□□ 0.49
CLDN9O95484 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
CLDN9O95484 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN9O95484 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLDN9O95484 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLDN9O95484 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN9O95484 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN9O95484 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN9O95484 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN9O95484 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLDN9O95484 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN9O95484 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 AL499627.1-201ENST00000569373 2188 ntBASIC18.1■□□□□ 0.49
CLDN9O95484 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLDN9O95484 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN9O95484 AC096733.2-201ENST00000609937 1394 ntBASIC18.1■□□□□ 0.49
CLDN9O95484 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLDN9O95484 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CLDN9O95484 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CLDN9O95484 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN9O95484 AC233702.5-201ENST00000584107 538 ntBASIC18.1■□□□□ 0.49
CLDN9O95484 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
CLDN9O95484 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN9O95484 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 BCL2-203ENST00000589955 5011 ntBASIC18.1■□□□□ 0.49
CLDN9O95484 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLDN9O95484 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN9O95484 BICD1-207ENST00000551848 1962 ntBASIC18.1■□□□□ 0.49
CLDN9O95484 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN9O95484 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.09■□□□□ 0.49
CLDN9O95484 SLC25A1P4-201ENST00000567977 778 ntBASIC18.09■□□□□ 0.49
CLDN9O95484 AC113410.3-201ENST00000623366 203 ntBASIC18.09■□□□□ 0.49
CLDN9O95484 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN9O95484 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN9O95484 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN9O95484 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms