Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
SIX3O95343 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.31■□□□□ 0.52
SIX3O95343 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
SIX3O95343 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
SIX3O95343 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.31■□□□□ 0.52
SIX3O95343 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SIX3O95343 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.31■□□□□ 0.52
SIX3O95343 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SIX3O95343 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SIX3O95343 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 RARRES2P10-201ENST00000564312 460 ntBASIC18.31■□□□□ 0.52
SIX3O95343 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.31■□□□□ 0.52
SIX3O95343 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.31■□□□□ 0.52
SIX3O95343 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.31■□□□□ 0.52
SIX3O95343 AC073195.1-201ENST00000607241 877 ntBASIC18.31■□□□□ 0.52
SIX3O95343 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SIX3O95343 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.31■□□□□ 0.52
SIX3O95343 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SIX3O95343 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX3O95343 AC026471.1-201ENST00000564629 3026 ntBASIC18.31■□□□□ 0.52
SIX3O95343 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SIX3O95343 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 AL357033.4-201ENST00000617703 1807 ntBASIC18.3■□□□□ 0.52
SIX3O95343 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.3■□□□□ 0.52
SIX3O95343 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.3■□□□□ 0.52
SIX3O95343 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.3■□□□□ 0.52
SIX3O95343 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
SIX3O95343 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.3■□□□□ 0.52
SIX3O95343 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.3■□□□□ 0.52
SIX3O95343 TSPY20P-201ENST00000450910 630 ntBASIC18.3■□□□□ 0.52
SIX3O95343 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
SIX3O95343 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.3■□□□□ 0.52
SIX3O95343 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
SIX3O95343 CKBP1-201ENST00000565489 1086 ntBASIC18.3■□□□□ 0.52
SIX3O95343 AC026271.3-201ENST00000571884 352 ntBASIC18.3■□□□□ 0.52
SIX3O95343 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SIX3O95343 AC130371.2-201ENST00000619443 611 ntBASIC18.3■□□□□ 0.52
SIX3O95343 FAM197Y4-202ENST00000622692 608 ntBASIC18.3■□□□□ 0.52
SIX3O95343 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.3■□□□□ 0.52
SIX3O95343 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.3■□□□□ 0.52
SIX3O95343 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SIX3O95343 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.3■□□□□ 0.52
SIX3O95343 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.3■□□□□ 0.52
SIX3O95343 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.3■□□□□ 0.52
SIX3O95343 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.3■□□□□ 0.52
SIX3O95343 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX3O95343 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
SIX3O95343 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 AC079598.2-202ENST00000546624 1451 ntBASIC18.29■□□□□ 0.52
SIX3O95343 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SIX3O95343 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 FAM201B-201ENST00000458407 597 ntBASIC18.29■□□□□ 0.52
SIX3O95343 B3GAT3P1-201ENST00000471720 806 ntBASIC18.29■□□□□ 0.52
SIX3O95343 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SIX3O95343 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SIX3O95343 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SIX3O95343 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.29■□□□□ 0.52
SIX3O95343 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.29■□□□□ 0.52
SIX3O95343 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.29■□□□□ 0.52
SIX3O95343 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SIX3O95343 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.29■□□□□ 0.52
SIX3O95343 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SIX3O95343 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms