Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDKL5O76039 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.77■■□□□ 1.08
CDKL5O76039 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
CDKL5O76039 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
CDKL5O76039 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 MIR1238-201ENST00000408483 83 ntBASIC21.76■■□□□ 1.07
CDKL5O76039 CCR12P-201ENST00000446203 998 ntBASIC21.76■■□□□ 1.07
CDKL5O76039 TSPY17P-201ENST00000450329 467 ntBASIC21.76■■□□□ 1.07
CDKL5O76039 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.76■■□□□ 1.07
CDKL5O76039 AC008556.1-201ENST00000610908 2040 ntBASIC21.76■■□□□ 1.07
CDKL5O76039 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDKL5O76039 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.76■■□□□ 1.07
CDKL5O76039 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CDKL5O76039 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.75■■□□□ 1.07
CDKL5O76039 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.75■■□□□ 1.07
CDKL5O76039 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDKL5O76039 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CDKL5O76039 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.75■■□□□ 1.07
CDKL5O76039 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CDKL5O76039 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.75■■□□□ 1.07
CDKL5O76039 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDKL5O76039 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.75■■□□□ 1.07
CDKL5O76039 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDKL5O76039 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.75■■□□□ 1.07
CDKL5O76039 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDKL5O76039 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDKL5O76039 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CDKL5O76039 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.75■■□□□ 1.07
CDKL5O76039 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDKL5O76039 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CDKL5O76039 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.75■■□□□ 1.07
CDKL5O76039 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CDKL5O76039 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.75■■□□□ 1.07
CDKL5O76039 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CDKL5O76039 AC090164.3-201ENST00000610780 2143 ntBASIC21.74■■□□□ 1.07
CDKL5O76039 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CDKL5O76039 KRT8P45-201ENST00000414328 1447 ntBASIC21.74■■□□□ 1.07
CDKL5O76039 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.74■■□□□ 1.07
CDKL5O76039 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.74■■□□□ 1.07
CDKL5O76039 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.74■■□□□ 1.07
CDKL5O76039 AL390955.1-201ENST00000428694 934 ntBASIC21.74■■□□□ 1.07
CDKL5O76039 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.74■■□□□ 1.07
CDKL5O76039 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CDKL5O76039 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.74■■□□□ 1.07
CDKL5O76039 C2orf69P3-201ENST00000565542 1120 ntBASIC21.74■■□□□ 1.07
CDKL5O76039 AL023803.3-201ENST00000615559 522 ntBASIC21.74■■□□□ 1.07
CDKL5O76039 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CDKL5O76039 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 AC005082.1-201ENST00000413042 2259 ntBASIC21.74■■□□□ 1.07
CDKL5O76039 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.74■■□□□ 1.07
CDKL5O76039 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CDKL5O76039 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.74■■□□□ 1.07
CDKL5O76039 AC020763.4-201ENST00000623414 4170 ntBASIC21.74■■□□□ 1.07
CDKL5O76039 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.74■■□□□ 1.07
CDKL5O76039 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
CDKL5O76039 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDKL5O76039 HCG11-201ENST00000411553 5696 ntBASIC21.73■■□□□ 1.07
CDKL5O76039 AC073592.3-201ENST00000625118 1834 ntBASIC21.73■■□□□ 1.07
CDKL5O76039 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
CDKL5O76039 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.73■■□□□ 1.07
CDKL5O76039 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.73■■□□□ 1.07
CDKL5O76039 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.73■■□□□ 1.07
CDKL5O76039 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.73■■□□□ 1.07
CDKL5O76039 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.73■■□□□ 1.07
CDKL5O76039 AL353719.1-201ENST00000566847 864 ntBASIC21.73■■□□□ 1.07
CDKL5O76039 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.73■■□□□ 1.07
CDKL5O76039 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.73■■□□□ 1.07
CDKL5O76039 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDKL5O76039 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms