Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV27A0A087WT01 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17■□□□□ 0.31
TRAV27A0A087WT01 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17■□□□□ 0.31
TRAV27A0A087WT01 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17■□□□□ 0.31
TRAV27A0A087WT01 ABBA01031674.1-201ENST00000635145 728 ntBASIC17■□□□□ 0.31
TRAV27A0A087WT01 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17■□□□□ 0.31
TRAV27A0A087WT01 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV27A0A087WT01 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAV27A0A087WT01 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17■□□□□ 0.31
TRAV27A0A087WT01 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
TRAV27A0A087WT01 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV27A0A087WT01 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 PRSS44-201ENST00000515154 1146 ntBASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 AL353708.3-201ENST00000610272 989 ntBASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 AC068587.9-201ENST00000641814 219 ntBASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV27A0A087WT01 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 AC073592.3-201ENST00000625118 1834 ntBASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 KSR1P1-201ENST00000446298 240 ntBASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 AC079598.2-202ENST00000546624 1451 ntBASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 AC005332.8-201ENST00000622750 2735 ntBASIC16.98■□□□□ 0.31
TRAV27A0A087WT01 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 KRT16P1-201ENST00000399124 1418 ntBASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 AC004951.3-201ENST00000418645 1148 ntBASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 CR392000.1-201ENST00000624770 1228 ntBASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 AL133373.2-201ENST00000623187 2828 ntBASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 KRT8P32-201ENST00000512863 1461 ntBASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV27A0A087WT01 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV27A0A087WT01 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAV27A0A087WT01 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TRAV27A0A087WT01 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV27A0A087WT01 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV27A0A087WT01 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV27A0A087WT01 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TRAV27A0A087WT01 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV27A0A087WT01 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV27A0A087WT01 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms