Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM56Q9BRZ2 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 AC128676.1-201ENST00000454392 318 ntBASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 AL499627.1-201ENST00000569373 2188 ntBASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.12■□□□□ 0.65
TRIM56Q9BRZ2 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 AC126763.1-201ENST00000552015 2118 ntBASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM56Q9BRZ2 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms