Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC140Q96MF4 CYP2D8P-201ENST00000433633 1490 ntBASIC14.5□□□□□ -0.09
CCDC140Q96MF4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 AC092338.2-201ENST00000568827 1415 ntBASIC14.5□□□□□ -0.09
CCDC140Q96MF4 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 AL499627.1-201ENST00000569373 2188 ntBASIC14.5□□□□□ -0.09
CCDC140Q96MF4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 CCR12P-201ENST00000446203 998 ntBASIC14.5□□□□□ -0.09
CCDC140Q96MF4 TSPY17P-201ENST00000450329 467 ntBASIC14.5□□□□□ -0.09
CCDC140Q96MF4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 AL353719.1-201ENST00000566847 864 ntBASIC14.5□□□□□ -0.09
CCDC140Q96MF4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC140Q96MF4 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 MMP23A-201ENST00000234610 1017 ntBASIC14.49□□□□□ -0.09
CCDC140Q96MF4 TSPY14P-201ENST00000303979 915 ntBASIC14.49□□□□□ -0.09
CCDC140Q96MF4 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 AC116562.4-202ENST00000641738 218 ntBASIC14.49□□□□□ -0.09
CCDC140Q96MF4 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC140Q96MF4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 AC036111.1-201ENST00000533973 1582 ntBASIC14.48□□□□□ -0.09
CCDC140Q96MF4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 AC007663.1-201ENST00000438948 1240 ntBASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms