Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 RN7SL471P-201ENST00000580476 299 ntBASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 AC073648.6-201ENST00000641589 218 ntBASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4AQ8WYN0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 ABALON-201ENST00000629058 1903 ntBASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 NIFKP9-201ENST00000419265 221 ntBASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 AC133681.1-201ENST00000465482 601 ntBASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 RPS2P4-201ENST00000476944 856 ntBASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 AC110285.5-201ENST00000611501 352 ntBASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
ATG4AQ8WYN0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 AC068880.1-201ENST00000507289 2297 ntBASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 AC006058.3-201ENST00000606217 1069 ntBASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 PCDHB18P-201ENST00000524813 2368 ntBASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
ATG4AQ8WYN0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 KRT8P32-201ENST00000512863 1461 ntBASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 AC091390.4-202ENST00000476426 537 ntBASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 AC131212.4-201ENST00000623606 975 ntBASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms