Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 BX088651.1-201ENST00000540551 451 ntBASIC20.24■□□□□ 0.83
KRT39Q6A163 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 AC010947.1-201ENST00000623454 693 ntBASIC20.24■□□□□ 0.83
KRT39Q6A163 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.24■□□□□ 0.83
KRT39Q6A163 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
KRT39Q6A163 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
KRT39Q6A163 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.23■□□□□ 0.83
KRT39Q6A163 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT39Q6A163 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT39Q6A163 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.23■□□□□ 0.83
KRT39Q6A163 WIZP1-201ENST00000531444 2299 ntBASIC20.23■□□□□ 0.83
KRT39Q6A163 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.23■□□□□ 0.83
KRT39Q6A163 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.23■□□□□ 0.83
KRT39Q6A163 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
KRT39Q6A163 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT39Q6A163 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT39Q6A163 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.23■□□□□ 0.83
KRT39Q6A163 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.23■□□□□ 0.83
KRT39Q6A163 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.23■□□□□ 0.83
KRT39Q6A163 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
KRT39Q6A163 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.23■□□□□ 0.83
KRT39Q6A163 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
KRT39Q6A163 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.23■□□□□ 0.83
KRT39Q6A163 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.23■□□□□ 0.83
KRT39Q6A163 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.23■□□□□ 0.83
KRT39Q6A163 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT39Q6A163 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
KRT39Q6A163 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT39Q6A163 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.22■□□□□ 0.83
KRT39Q6A163 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.22■□□□□ 0.83
KRT39Q6A163 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT39Q6A163 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT39Q6A163 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
KRT39Q6A163 AC010653.2-201ENST00000623505 997 ntBASIC20.22■□□□□ 0.83
KRT39Q6A163 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
KRT39Q6A163 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT39Q6A163 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT39Q6A163 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
KRT39Q6A163 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT39Q6A163 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
KRT39Q6A163 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
KRT39Q6A163 AC128688.1-201ENST00000487626 519 ntBASIC20.21■□□□□ 0.83
KRT39Q6A163 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT39Q6A163 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT39Q6A163 MIR3180-5-201ENST00000583743 153 ntBASIC20.21■□□□□ 0.83
KRT39Q6A163 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
KRT39Q6A163 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
KRT39Q6A163 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT39Q6A163 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.21■□□□□ 0.83
KRT39Q6A163 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
KRT39Q6A163 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT39Q6A163 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT39Q6A163 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
KRT39Q6A163 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT39Q6A163 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.2■□□□□ 0.82
KRT39Q6A163 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.2■□□□□ 0.82
KRT39Q6A163 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT39Q6A163 MIR564-202ENST00000385049 94 ntBASIC20.2■□□□□ 0.82
KRT39Q6A163 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
KRT39Q6A163 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.2■□□□□ 0.82
KRT39Q6A163 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
KRT39Q6A163 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
KRT39Q6A163 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.2■□□□□ 0.82
KRT39Q6A163 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT39Q6A163 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
KRT39Q6A163 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
KRT39Q6A163 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT39Q6A163 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.2■□□□□ 0.82
KRT39Q6A163 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT39Q6A163 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT39Q6A163 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT39Q6A163 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
KRT39Q6A163 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT39Q6A163 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT39Q6A163 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
KRT39Q6A163 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.19■□□□□ 0.82
KRT39Q6A163 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.19■□□□□ 0.82
KRT39Q6A163 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.19■□□□□ 0.82
KRT39Q6A163 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT39Q6A163 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT39Q6A163 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT39Q6A163 INGX-201ENST00000359239 846 ntBASIC20.19■□□□□ 0.82
KRT39Q6A163 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms