Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AC016734.2-201ENST00000624325 1377 ntBASIC16.89■□□□□ 0.29
RNFT1Q5M7Z0 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNFT1Q5M7Z0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNFT1Q5M7Z0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 HOXB1-202ENST00000577092 1414 ntBASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 AC104390.1-201ENST00000555663 520 ntBASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
RNFT1Q5M7Z0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 AC010240.3-201ENST00000607688 395 ntBASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
RNFT1Q5M7Z0 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 AC006333.2-201ENST00000607957 2099 ntBASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 MIR662-201ENST00000384847 95 ntBASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 AL450487.1-201ENST00000426799 995 ntBASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 TSSC2-201ENST00000450217 709 ntBASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 MIR3180-1-201ENST00000580374 94 ntBASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 MIR3180-3-201ENST00000584616 94 ntBASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 KRT8P7-201ENST00000533003 1432 ntBASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
RNFT1Q5M7Z0 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNFT1Q5M7Z0 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNFT1Q5M7Z0 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNFT1Q5M7Z0 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms