Protein–RNA interactions for Protein: Q12824

SMARCB1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, humanhuman

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1Q12824 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.66■□□□□ 0.74
SMARCB1Q12824 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.66■□□□□ 0.74
SMARCB1Q12824 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.66■□□□□ 0.74
SMARCB1Q12824 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCB1Q12824 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCB1Q12824 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCB1Q12824 AL391807.1-203ENST00000604392 2365 ntBASIC19.66■□□□□ 0.74
SMARCB1Q12824 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCB1Q12824 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.66■□□□□ 0.74
SMARCB1Q12824 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SMARCB1Q12824 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCB1Q12824 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCB1Q12824 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCB1Q12824 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 AC083906.6-201ENST00000641366 219 ntBASIC19.65■□□□□ 0.74
SMARCB1Q12824 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCB1Q12824 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 AC007952.6-201ENST00000573168 2673 ntBASIC19.65■□□□□ 0.74
SMARCB1Q12824 AC003957.1-201ENST00000625108 2673 ntBASIC19.65■□□□□ 0.74
SMARCB1Q12824 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCB1Q12824 Z98044.1-201ENST00000632503 1764 ntBASIC19.65■□□□□ 0.74
SMARCB1Q12824 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.64■□□□□ 0.74
SMARCB1Q12824 AC005332.7-201ENST00000614046 2005 ntBASIC19.64■□□□□ 0.74
SMARCB1Q12824 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SMARCB1Q12824 MIR662-201ENST00000384847 95 ntBASIC19.64■□□□□ 0.73
SMARCB1Q12824 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCB1Q12824 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 PVRIG2P-201ENST00000435460 978 ntBASIC19.64■□□□□ 0.73
SMARCB1Q12824 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCB1Q12824 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCB1Q12824 AC079602.3-201ENST00000623931 403 ntBASIC19.64■□□□□ 0.73
SMARCB1Q12824 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCB1Q12824 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCB1Q12824 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCB1Q12824 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCB1Q12824 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCB1Q12824 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SMARCB1Q12824 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCB1Q12824 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCB1Q12824 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCB1Q12824 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCB1Q12824 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCB1Q12824 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.63■□□□□ 0.73
SMARCB1Q12824 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCB1Q12824 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.62■□□□□ 0.73
SMARCB1Q12824 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCB1Q12824 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCB1Q12824 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SMARCB1Q12824 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCB1Q12824 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCB1Q12824 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCB1Q12824 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.62■□□□□ 0.73
SMARCB1Q12824 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCB1Q12824 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCB1Q12824 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCB1Q12824 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.62■□□□□ 0.73
SMARCB1Q12824 AC011498.5-201ENST00000592027 486 ntBASIC19.62■□□□□ 0.73
SMARCB1Q12824 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCB1Q12824 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms