Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC15.27■□□□□ 0.04
SPCS3P61009 AC120498.8-201ENST00000614275 531 ntBASIC15.27■□□□□ 0.04
SPCS3P61009 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SPCS3P61009 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SPCS3P61009 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SPCS3P61009 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.27■□□□□ 0.03
SPCS3P61009 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SPCS3P61009 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SPCS3P61009 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
SPCS3P61009 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.27■□□□□ 0.03
SPCS3P61009 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SPCS3P61009 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC15.27■□□□□ 0.03
SPCS3P61009 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.27■□□□□ 0.03
SPCS3P61009 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SPCS3P61009 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
SPCS3P61009 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
SPCS3P61009 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.27■□□□□ 0.03
SPCS3P61009 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SPCS3P61009 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC15.26■□□□□ 0.03
SPCS3P61009 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SPCS3P61009 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.26■□□□□ 0.03
SPCS3P61009 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC15.26■□□□□ 0.03
SPCS3P61009 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC15.26■□□□□ 0.03
SPCS3P61009 AC083906.2-201ENST00000511578 360 ntBASIC15.26■□□□□ 0.03
SPCS3P61009 BET1L-207ENST00000529614 560 ntTSL 5 BASIC15.26■□□□□ 0.03
SPCS3P61009 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC15.26■□□□□ 0.03
SPCS3P61009 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
SPCS3P61009 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
SPCS3P61009 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SPCS3P61009 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPCS3P61009 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC15.26■□□□□ 0.03
SPCS3P61009 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.25■□□□□ 0.03
SPCS3P61009 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.25■□□□□ 0.03
SPCS3P61009 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SPCS3P61009 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SPCS3P61009 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC15.25■□□□□ 0.03
SPCS3P61009 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC15.25■□□□□ 0.03
SPCS3P61009 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC15.25■□□□□ 0.03
SPCS3P61009 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC15.25■□□□□ 0.03
SPCS3P61009 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC15.25■□□□□ 0.03
SPCS3P61009 AC097658.1-201ENST00000475555 843 ntBASIC15.25■□□□□ 0.03
SPCS3P61009 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC15.25■□□□□ 0.03
SPCS3P61009 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SPCS3P61009 PNMA6B-201ENST00000538162 1200 ntBASIC15.25■□□□□ 0.03
SPCS3P61009 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC15.25■□□□□ 0.03
SPCS3P61009 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 AC060766.5-201ENST00000590539 871 ntBASIC15.25■□□□□ 0.03
SPCS3P61009 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC15.25■□□□□ 0.03
SPCS3P61009 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.25■□□□□ 0.03
SPCS3P61009 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SPCS3P61009 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
SPCS3P61009 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPCS3P61009 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms