Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
AP3S2P59780 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP3S2P59780 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.11■□□□□ 0.17
AP3S2P59780 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP3S2P59780 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP3S2P59780 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
AP3S2P59780 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.11■□□□□ 0.17
AP3S2P59780 UBE2DNL-204ENST00000602536 740 ntBASIC16.11■□□□□ 0.17
AP3S2P59780 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP3S2P59780 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
AP3S2P59780 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP3S2P59780 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
AP3S2P59780 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP3S2P59780 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.11■□□□□ 0.17
AP3S2P59780 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 AC099398.1-201ENST00000567919 2776 ntBASIC16.1■□□□□ 0.17
AP3S2P59780 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
AP3S2P59780 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC16.1■□□□□ 0.17
AP3S2P59780 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
AP3S2P59780 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 KRT19P1-201ENST00000405746 1186 ntBASIC16.1■□□□□ 0.17
AP3S2P59780 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.1■□□□□ 0.17
AP3S2P59780 AC007322.4-201ENST00000509611 723 ntBASIC16.1■□□□□ 0.17
AP3S2P59780 C2orf69P4-201ENST00000565394 541 ntBASIC16.1■□□□□ 0.17
AP3S2P59780 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
AP3S2P59780 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.1■□□□□ 0.17
AP3S2P59780 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.1■□□□□ 0.17
AP3S2P59780 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.1■□□□□ 0.17
AP3S2P59780 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
AP3S2P59780 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 AC138028.4-201ENST00000564984 1845 ntBASIC16.1■□□□□ 0.17
AP3S2P59780 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP3S2P59780 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.09■□□□□ 0.17
AP3S2P59780 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC16.09■□□□□ 0.17
AP3S2P59780 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
AP3S2P59780 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 AC141586.5-201ENST00000624546 2050 ntBASIC16.09■□□□□ 0.17
AP3S2P59780 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 HES2-205ENST00000487437 968 ntTSL 3 BASIC16.09■□□□□ 0.17
AP3S2P59780 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC16.09■□□□□ 0.17
AP3S2P59780 RHOF-204ENST00000537265 699 ntTSL 2 BASIC16.09■□□□□ 0.17
AP3S2P59780 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC16.09■□□□□ 0.17
AP3S2P59780 AC010536.3-201ENST00000620306 533 ntBASIC16.09■□□□□ 0.17
AP3S2P59780 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.09■□□□□ 0.17
AP3S2P59780 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.09■□□□□ 0.17
AP3S2P59780 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.09■□□□□ 0.17
AP3S2P59780 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.09■□□□□ 0.17
AP3S2P59780 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.09■□□□□ 0.17
AP3S2P59780 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP3S2P59780 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
AP3S2P59780 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
AP3S2P59780 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
AP3S2P59780 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.08■□□□□ 0.17
AP3S2P59780 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
AP3S2P59780 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.08■□□□□ 0.17
AP3S2P59780 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.08■□□□□ 0.17
AP3S2P59780 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
AP3S2P59780 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms