Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC112497.1-201ENST00000624824 639 ntBASIC21.06■□□□□ 0.96
MSH4O15457 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.06■□□□□ 0.96
MSH4O15457 AC034236.2-201ENST00000606662 1610 ntBASIC21.06■□□□□ 0.96
MSH4O15457 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
MSH4O15457 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.06■□□□□ 0.96
MSH4O15457 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
MSH4O15457 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
MSH4O15457 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH4O15457 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH4O15457 HOXB1-202ENST00000577092 1414 ntBASIC21.05■□□□□ 0.96
MSH4O15457 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH4O15457 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH4O15457 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 FAM8A6P-201ENST00000407496 1135 ntBASIC21.05■□□□□ 0.96
MSH4O15457 KRT18P23-201ENST00000435622 1283 ntBASIC21.05■□□□□ 0.96
MSH4O15457 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.05■□□□□ 0.96
MSH4O15457 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
MSH4O15457 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.05■□□□□ 0.96
MSH4O15457 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
MSH4O15457 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
MSH4O15457 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH4O15457 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH4O15457 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.04■□□□□ 0.96
MSH4O15457 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.04■□□□□ 0.96
MSH4O15457 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH4O15457 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
MSH4O15457 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH4O15457 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 NTF6B-201ENST00000591913 560 ntBASIC21.04■□□□□ 0.96
MSH4O15457 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
MSH4O15457 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
MSH4O15457 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH4O15457 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH4O15457 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
MSH4O15457 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.03■□□□□ 0.96
MSH4O15457 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH4O15457 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 KRT18P38-201ENST00000449496 1282 ntBASIC21.03■□□□□ 0.96
MSH4O15457 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.03■□□□□ 0.96
MSH4O15457 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.03■□□□□ 0.96
MSH4O15457 AL445228.2-201ENST00000605589 952 ntBASIC21.03■□□□□ 0.96
MSH4O15457 AL590326.2-201ENST00000625139 305 ntBASIC21.03■□□□□ 0.96
MSH4O15457 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
MSH4O15457 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH4O15457 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH4O15457 AC098818.2-201ENST00000564925 2320 ntBASIC21.03■□□□□ 0.96
MSH4O15457 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.02■□□□□ 0.96
MSH4O15457 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH4O15457 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH4O15457 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.02■□□□□ 0.96
MSH4O15457 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
MSH4O15457 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.02■□□□□ 0.96
MSH4O15457 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.02■□□□□ 0.96
MSH4O15457 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH4O15457 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.02■□□□□ 0.96
MSH4O15457 KRT18P35-201ENST00000510488 1269 ntBASIC21.02■□□□□ 0.96
MSH4O15457 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.02■□□□□ 0.96
MSH4O15457 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms