Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 TPT1-202ENST00000379055 948 ntTSL 2 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 MYB-201ENST00000316528 3571 ntTSL 5 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 MYB-241ENST00000616088 3573 ntTSL 5 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 STX5-203ENST00000394690 1568 ntTSL 5 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 GATM-206ENST00000558336 1522 ntTSL 2 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
CHKB-CPT1BH3BT56 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 AL118508.1-201ENST00000613502 2345 ntBASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 AL162393.1-201ENST00000437852 946 ntBASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CHKB-CPT1BH3BT56 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
CHKB-CPT1BH3BT56 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC10.41□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms