Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 AP002414.2-202ENST00000590929 1450 ntBASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHB1Q9Y5F3 RARRES2P2-201ENST00000394842 485 ntBASIC25.21■■□□□ 1.63
PCDHB1Q9Y5F3 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC25.2■■□□□ 1.62
PCDHB1Q9Y5F3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHB1Q9Y5F3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.19■■□□□ 1.62
PCDHB1Q9Y5F3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHB1Q9Y5F3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHB1Q9Y5F3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHB1Q9Y5F3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHB1Q9Y5F3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
PCDHB1Q9Y5F3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.17■■□□□ 1.62
PCDHB1Q9Y5F3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHB1Q9Y5F3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHB1Q9Y5F3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
PCDHB1Q9Y5F3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC25.16■■□□□ 1.62
PCDHB1Q9Y5F3 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHB1Q9Y5F3 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHB1Q9Y5F3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHB1Q9Y5F3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHB1Q9Y5F3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
PCDHB1Q9Y5F3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHB1Q9Y5F3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PCDHB1Q9Y5F3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.14■■□□□ 1.62
PCDHB1Q9Y5F3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.14■■□□□ 1.62
PCDHB1Q9Y5F3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.14■■□□□ 1.61
PCDHB1Q9Y5F3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHB1Q9Y5F3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHB1Q9Y5F3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHB1Q9Y5F3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC25.13■■□□□ 1.61
PCDHB1Q9Y5F3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHB1Q9Y5F3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHB1Q9Y5F3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 GPX1-201ENST00000419349 1106 ntBASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 ABHD17AP5-201ENST00000580133 923 ntBASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC25.12■■□□□ 1.61
PCDHB1Q9Y5F3 BX255925.1-201ENST00000566954 1854 ntBASIC25.11■■□□□ 1.61
PCDHB1Q9Y5F3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
PCDHB1Q9Y5F3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
PCDHB1Q9Y5F3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHB1Q9Y5F3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHB1Q9Y5F3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHB1Q9Y5F3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHB1Q9Y5F3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHB1Q9Y5F3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHB1Q9Y5F3 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHB1Q9Y5F3 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHB1Q9Y5F3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.09■■□□□ 1.61
PCDHB1Q9Y5F3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.09■■□□□ 1.61
PCDHB1Q9Y5F3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.09■■□□□ 1.61
PCDHB1Q9Y5F3 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC25.09■■□□□ 1.61
PCDHB1Q9Y5F3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHB1Q9Y5F3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHB1Q9Y5F3 LINC01003-201ENST00000564834 1764 ntBASIC25.07■■□□□ 1.6
PCDHB1Q9Y5F3 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHB1Q9Y5F3 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHB1Q9Y5F3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHB1Q9Y5F3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
PCDHB1Q9Y5F3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHB1Q9Y5F3 AC018358.1-201ENST00000631079 1402 ntBASIC25.04■■□□□ 1.6
PCDHB1Q9Y5F3 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHB1Q9Y5F3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.04■■□□□ 1.6
PCDHB1Q9Y5F3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
PCDHB1Q9Y5F3 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
PCDHB1Q9Y5F3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHB1Q9Y5F3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHB1Q9Y5F3 AC110285.7-201ENST00000624417 1536 ntBASIC25.03■■□□□ 1.6
PCDHB1Q9Y5F3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC25.03■■□□□ 1.6
PCDHB1Q9Y5F3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC25.03■■□□□ 1.6
PCDHB1Q9Y5F3 RNF126P1-201ENST00000567452 1320 ntBASIC25.03■■□□□ 1.6
PCDHB1Q9Y5F3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHB1Q9Y5F3 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHB1Q9Y5F3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHB1Q9Y5F3 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.02■■□□□ 1.6
PCDHB1Q9Y5F3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC25.02■■□□□ 1.6
PCDHB1Q9Y5F3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHB1Q9Y5F3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHB1Q9Y5F3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25■■□□□ 1.59
PCDHB1Q9Y5F3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25■■□□□ 1.59
PCDHB1Q9Y5F3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25■■□□□ 1.59
PCDHB1Q9Y5F3 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25■■□□□ 1.59
PCDHB1Q9Y5F3 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25■■□□□ 1.59
PCDHB1Q9Y5F3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms