Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CTDP1Q9Y5B0 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
CTDP1Q9Y5B0 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CTDP1Q9Y5B0 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29.15■■■□□ 2.26
CTDP1Q9Y5B0 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
CTDP1Q9Y5B0 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.15■■■□□ 2.26
CTDP1Q9Y5B0 AL139393.2-201ENST00000608721 2025 ntBASIC29.15■■■□□ 2.26
CTDP1Q9Y5B0 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.14■■■□□ 2.26
CTDP1Q9Y5B0 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
CTDP1Q9Y5B0 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC29.14■■■□□ 2.26
CTDP1Q9Y5B0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
CTDP1Q9Y5B0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC29.14■■■□□ 2.25
CTDP1Q9Y5B0 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.13■■■□□ 2.25
CTDP1Q9Y5B0 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC29.13■■■□□ 2.25
CTDP1Q9Y5B0 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC29.12■■■□□ 2.25
CTDP1Q9Y5B0 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
CTDP1Q9Y5B0 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
CTDP1Q9Y5B0 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
CTDP1Q9Y5B0 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC29.11■■■□□ 2.25
CTDP1Q9Y5B0 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC29.11■■■□□ 2.25
CTDP1Q9Y5B0 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
CTDP1Q9Y5B0 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC29.1■■■□□ 2.25
CTDP1Q9Y5B0 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.1■■■□□ 2.25
CTDP1Q9Y5B0 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.1■■■□□ 2.25
CTDP1Q9Y5B0 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC29.1■■■□□ 2.25
CTDP1Q9Y5B0 AC092296.2-201ENST00000589470 999 ntBASIC29.1■■■□□ 2.25
CTDP1Q9Y5B0 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.1■■■□□ 2.25
CTDP1Q9Y5B0 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
CTDP1Q9Y5B0 ECEL1P2-201ENST00000461596 1295 ntBASIC29.09■■■□□ 2.25
CTDP1Q9Y5B0 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC29.09■■■□□ 2.25
CTDP1Q9Y5B0 HYI-213ENST00000583037 1322 ntTSL 5 BASIC29.09■■■□□ 2.25
CTDP1Q9Y5B0 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
CTDP1Q9Y5B0 ABCB10P3-201ENST00000561950 2166 ntBASIC29.09■■■□□ 2.25
CTDP1Q9Y5B0 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC29.09■■■□□ 2.25
CTDP1Q9Y5B0 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
CTDP1Q9Y5B0 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC29.09■■■□□ 2.25
CTDP1Q9Y5B0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.08■■■□□ 2.25
CTDP1Q9Y5B0 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
CTDP1Q9Y5B0 MED25-210ENST00000612854 801 ntTSL 5 BASIC29.08■■■□□ 2.25
CTDP1Q9Y5B0 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
CTDP1Q9Y5B0 MED25-214ENST00000622402 642 ntTSL 5 BASIC29.08■■■□□ 2.25
CTDP1Q9Y5B0 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
CTDP1Q9Y5B0 ST7-205ENST00000393446 2114 ntTSL 5 BASIC29.08■■■□□ 2.25
CTDP1Q9Y5B0 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
CTDP1Q9Y5B0 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC29.07■■■□□ 2.24
CTDP1Q9Y5B0 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
CTDP1Q9Y5B0 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
CTDP1Q9Y5B0 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
CTDP1Q9Y5B0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.07■■■□□ 2.24
CTDP1Q9Y5B0 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC29.07■■■□□ 2.24
CTDP1Q9Y5B0 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC29.06■■■□□ 2.24
CTDP1Q9Y5B0 AC012354.3-201ENST00000623734 483 ntBASIC29.06■■■□□ 2.24
CTDP1Q9Y5B0 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
CTDP1Q9Y5B0 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.06■■■□□ 2.24
CTDP1Q9Y5B0 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC29.06■■■□□ 2.24
CTDP1Q9Y5B0 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.06■■■□□ 2.24
CTDP1Q9Y5B0 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC29.06■■■□□ 2.24
CTDP1Q9Y5B0 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
CTDP1Q9Y5B0 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
CTDP1Q9Y5B0 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC29.04■■■□□ 2.24
CTDP1Q9Y5B0 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.04■■■□□ 2.24
CTDP1Q9Y5B0 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
CTDP1Q9Y5B0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
CTDP1Q9Y5B0 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
CTDP1Q9Y5B0 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC29.02■■■□□ 2.24
CTDP1Q9Y5B0 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
CTDP1Q9Y5B0 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC29.02■■■□□ 2.24
CTDP1Q9Y5B0 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC29.02■■■□□ 2.24
CTDP1Q9Y5B0 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
CTDP1Q9Y5B0 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.01■■■□□ 2.23
CTDP1Q9Y5B0 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC29.01■■■□□ 2.23
CTDP1Q9Y5B0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC29.01■■■□□ 2.23
CTDP1Q9Y5B0 U85056.1-201ENST00000616429 682 ntBASIC29.01■■■□□ 2.23
CTDP1Q9Y5B0 ABCB10P1-201ENST00000614297 2181 ntBASIC29.01■■■□□ 2.23
CTDP1Q9Y5B0 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
CTDP1Q9Y5B0 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC29■■■□□ 2.23
CTDP1Q9Y5B0 MOB2-207ENST00000614710 705 ntTSL 5 BASIC29■■■□□ 2.23
CTDP1Q9Y5B0 AL359258.2-201ENST00000564063 1566 ntBASIC29■■■□□ 2.23
CTDP1Q9Y5B0 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
CTDP1Q9Y5B0 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
CTDP1Q9Y5B0 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC28.99■■■□□ 2.23
CTDP1Q9Y5B0 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC28.98■■■□□ 2.23
CTDP1Q9Y5B0 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC28.98■■■□□ 2.23
CTDP1Q9Y5B0 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC28.98■■■□□ 2.23
CTDP1Q9Y5B0 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.97■■■□□ 2.23
CTDP1Q9Y5B0 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.97■■■□□ 2.23
CTDP1Q9Y5B0 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
CTDP1Q9Y5B0 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
CTDP1Q9Y5B0 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.96■■■□□ 2.23
CTDP1Q9Y5B0 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
CTDP1Q9Y5B0 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
CTDP1Q9Y5B0 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.96■■■□□ 2.23
CTDP1Q9Y5B0 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.96■■■□□ 2.23
CTDP1Q9Y5B0 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.23
CTDP1Q9Y5B0 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC28.95■■■□□ 2.22
CTDP1Q9Y5B0 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC28.95■■■□□ 2.22
CTDP1Q9Y5B0 AP002414.2-202ENST00000590929 1450 ntBASIC28.95■■■□□ 2.22
CTDP1Q9Y5B0 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.95■■■□□ 2.22
CTDP1Q9Y5B0 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.95■■■□□ 2.22
CTDP1Q9Y5B0 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms