Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.12■■□□□ 1.13
LIME1Q9H400 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
LIME1Q9H400 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.11■■□□□ 1.13
LIME1Q9H400 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LIME1Q9H400 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LIME1Q9H400 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC22.11■■□□□ 1.13
LIME1Q9H400 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC22.11■■□□□ 1.13
LIME1Q9H400 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LIME1Q9H400 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LIME1Q9H400 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LIME1Q9H400 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.11■■□□□ 1.13
LIME1Q9H400 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
LIME1Q9H400 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
LIME1Q9H400 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LIME1Q9H400 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LIME1Q9H400 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LIME1Q9H400 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC22.1■■□□□ 1.13
LIME1Q9H400 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LIME1Q9H400 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
LIME1Q9H400 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC22.09■■□□□ 1.13
LIME1Q9H400 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
LIME1Q9H400 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
LIME1Q9H400 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
LIME1Q9H400 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
LIME1Q9H400 CHST11-203ENST00000547956 936 ntTSL 2 BASIC22.07■■□□□ 1.12
LIME1Q9H400 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.07■■□□□ 1.12
LIME1Q9H400 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
LIME1Q9H400 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
LIME1Q9H400 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
LIME1Q9H400 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC22.05■■□□□ 1.12
LIME1Q9H400 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
LIME1Q9H400 AC060814.1-201ENST00000554326 538 ntBASIC22.05■■□□□ 1.12
LIME1Q9H400 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
LIME1Q9H400 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
LIME1Q9H400 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
LIME1Q9H400 WHAMMP2-203ENST00000563942 1603 ntBASIC22.05■■□□□ 1.12
LIME1Q9H400 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
LIME1Q9H400 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LIME1Q9H400 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.04■■□□□ 1.12
LIME1Q9H400 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.04■■□□□ 1.12
LIME1Q9H400 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC22.04■■□□□ 1.12
LIME1Q9H400 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.04■■□□□ 1.12
LIME1Q9H400 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
LIME1Q9H400 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LIME1Q9H400 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LIME1Q9H400 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
LIME1Q9H400 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LIME1Q9H400 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
LIME1Q9H400 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.02■■□□□ 1.12
LIME1Q9H400 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.02■■□□□ 1.12
LIME1Q9H400 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.02■■□□□ 1.12
LIME1Q9H400 KRT18P60-201ENST00000312876 1297 ntBASIC22.01■■□□□ 1.11
LIME1Q9H400 AC004987.1-201ENST00000428627 508 ntBASIC22.01■■□□□ 1.11
LIME1Q9H400 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LIME1Q9H400 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC22.01■■□□□ 1.11
LIME1Q9H400 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
LIME1Q9H400 AC142086.6-201ENST00000621154 1765 ntBASIC22■■□□□ 1.11
LIME1Q9H400 AC135983.2-203ENST00000454486 1613 ntBASIC22■■□□□ 1.11
LIME1Q9H400 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
LIME1Q9H400 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LIME1Q9H400 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22■■□□□ 1.11
LIME1Q9H400 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22■■□□□ 1.11
LIME1Q9H400 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC22■■□□□ 1.11
LIME1Q9H400 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LIME1Q9H400 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LIME1Q9H400 AC127502.1-201ENST00000399971 1502 ntBASIC22■■□□□ 1.11
LIME1Q9H400 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LIME1Q9H400 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.99■■□□□ 1.11
LIME1Q9H400 TSPY13P-201ENST00000338964 914 ntBASIC21.99■■□□□ 1.11
LIME1Q9H400 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LIME1Q9H400 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.99■■□□□ 1.11
LIME1Q9H400 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
LIME1Q9H400 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
LIME1Q9H400 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LIME1Q9H400 AL139393.2-201ENST00000608721 2025 ntBASIC21.97■■□□□ 1.11
LIME1Q9H400 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
LIME1Q9H400 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LIME1Q9H400 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LIME1Q9H400 RARRES2P1-201ENST00000474487 481 ntBASIC21.97■■□□□ 1.11
LIME1Q9H400 AC110285.7-201ENST00000624417 1536 ntBASIC21.96■■□□□ 1.11
LIME1Q9H400 ATP5G2P3-201ENST00000429083 425 ntBASIC21.96■■□□□ 1.11
LIME1Q9H400 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
LIME1Q9H400 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.96■■□□□ 1.11
LIME1Q9H400 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
LIME1Q9H400 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LIME1Q9H400 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.95■■□□□ 1.1
LIME1Q9H400 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIME1Q9H400 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIME1Q9H400 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.95■■□□□ 1.1
LIME1Q9H400 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.94■■□□□ 1.1
LIME1Q9H400 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
LIME1Q9H400 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LIME1Q9H400 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.94■■□□□ 1.1
LIME1Q9H400 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LIME1Q9H400 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
LIME1Q9H400 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
LIME1Q9H400 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
LIME1Q9H400 AC148477.6-201ENST00000623746 465 ntBASIC21.92■■□□□ 1.1
LIME1Q9H400 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LIME1Q9H400 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms