Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.43■■□□□ 1.02
FOXC2Q99958 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXC2Q99958 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
FOXC2Q99958 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.43■■□□□ 1.02
FOXC2Q99958 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXC2Q99958 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC21.43■■□□□ 1.02
FOXC2Q99958 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.42■■□□□ 1.02
FOXC2Q99958 AC009299.2-201ENST00000482477 511 ntBASIC21.42■■□□□ 1.02
FOXC2Q99958 BHLHE23-202ENST00000612929 1109 ntBASIC21.42■■□□□ 1.02
FOXC2Q99958 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.41■■□□□ 1.02
FOXC2Q99958 RP9P-202ENST00000450133 1212 ntBASIC21.41■■□□□ 1.02
FOXC2Q99958 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.41■■□□□ 1.02
FOXC2Q99958 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
FOXC2Q99958 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
FOXC2Q99958 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.4■■□□□ 1.02
FOXC2Q99958 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.4■■□□□ 1.02
FOXC2Q99958 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXC2Q99958 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.39■■□□□ 1.01
FOXC2Q99958 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXC2Q99958 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXC2Q99958 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXC2Q99958 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXC2Q99958 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
FOXC2Q99958 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.38■■□□□ 1.01
FOXC2Q99958 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
FOXC2Q99958 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXC2Q99958 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXC2Q99958 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXC2Q99958 THA1P-201ENST00000590384 1145 ntBASIC21.37■■□□□ 1.01
FOXC2Q99958 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FOXC2Q99958 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
FOXC2Q99958 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
FOXC2Q99958 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FOXC2Q99958 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.36■■□□□ 1.01
FOXC2Q99958 SMPD5-203ENST00000639008 1464 ntBASIC21.36■■□□□ 1.01
FOXC2Q99958 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
FOXC2Q99958 YBX1P4-201ENST00000392794 808 ntBASIC21.35■■□□□ 1.01
FOXC2Q99958 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
FOXC2Q99958 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.35■■□□□ 1.01
FOXC2Q99958 AC010980.1-201ENST00000587192 1142 ntBASIC21.35■■□□□ 1.01
FOXC2Q99958 AC026202.3-201ENST00000600805 1127 ntBASIC21.35■■□□□ 1.01
FOXC2Q99958 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXC2Q99958 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.34■■□□□ 1.01
FOXC2Q99958 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXC2Q99958 GUSBP5-201ENST00000418136 578 ntBASIC21.34■■□□□ 1.01
FOXC2Q99958 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.34■■□□□ 1.01
FOXC2Q99958 KRT8P33-201ENST00000508125 1423 ntBASIC21.34■■□□□ 1.01
FOXC2Q99958 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXC2Q99958 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXC2Q99958 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
FOXC2Q99958 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXC2Q99958 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXC2Q99958 DUX4L9-201ENST00000449051 1259 ntBASIC21.33■■□□□ 1.01
FOXC2Q99958 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FOXC2Q99958 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FOXC2Q99958 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXC2Q99958 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC21.33■■□□□ 1
FOXC2Q99958 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.31■■□□□ 1
FOXC2Q99958 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
FOXC2Q99958 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXC2Q99958 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXC2Q99958 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
FOXC2Q99958 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.3■■□□□ 1
FOXC2Q99958 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
FOXC2Q99958 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXC2Q99958 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.29■■□□□ 1
FOXC2Q99958 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXC2Q99958 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.29■■□□□ 1
FOXC2Q99958 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
FOXC2Q99958 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
FOXC2Q99958 AC139795.1-202ENST00000500444 432 ntBASIC21.29■■□□□ 1
FOXC2Q99958 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
FOXC2Q99958 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXC2Q99958 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC21.28■■□□□ 1
FOXC2Q99958 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXC2Q99958 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXC2Q99958 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.28■■□□□ 1
FOXC2Q99958 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXC2Q99958 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.28■■□□□ 1
FOXC2Q99958 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.28■■□□□ 1
FOXC2Q99958 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXC2Q99958 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
FOXC2Q99958 MIR935-201ENST00000401179 91 ntBASIC21.27■■□□□ 1
FOXC2Q99958 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.27■■□□□ 1
FOXC2Q99958 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.27■■□□□ 1
FOXC2Q99958 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.27■■□□□ 1
FOXC2Q99958 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
FOXC2Q99958 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
FOXC2Q99958 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.26■□□□□ 0.99
FOXC2Q99958 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXC2Q99958 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.26■□□□□ 0.99
FOXC2Q99958 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
FOXC2Q99958 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.26■□□□□ 0.99
FOXC2Q99958 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXC2Q99958 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
FOXC2Q99958 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXC2Q99958 AC103834.1-201ENST00000520383 144 ntBASIC21.25■□□□□ 0.99
FOXC2Q99958 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.24■□□□□ 0.99
FOXC2Q99958 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
FOXC2Q99958 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms