Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX3-1Q99801 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX3-1Q99801 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX3-1Q99801 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.79■■□□□ 1.08
NKX3-1Q99801 WHAMMP2-203ENST00000563942 1603 ntBASIC21.79■■□□□ 1.08
NKX3-1Q99801 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NKX3-1Q99801 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
NKX3-1Q99801 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.78■■□□□ 1.08
NKX3-1Q99801 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
NKX3-1Q99801 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
NKX3-1Q99801 AC135983.2-203ENST00000454486 1613 ntBASIC21.77■■□□□ 1.07
NKX3-1Q99801 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NKX3-1Q99801 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NKX3-1Q99801 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NKX3-1Q99801 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NKX3-1Q99801 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NKX3-1Q99801 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
NKX3-1Q99801 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NKX3-1Q99801 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.74■■□□□ 1.07
NKX3-1Q99801 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.74■■□□□ 1.07
NKX3-1Q99801 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
NKX3-1Q99801 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.74■■□□□ 1.07
NKX3-1Q99801 AC005559.1-201ENST00000589661 871 ntBASIC21.74■■□□□ 1.07
NKX3-1Q99801 MIR6090-201ENST00000622481 60 ntBASIC21.74■■□□□ 1.07
NKX3-1Q99801 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NKX3-1Q99801 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX3-1Q99801 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.73■■□□□ 1.07
NKX3-1Q99801 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NKX3-1Q99801 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
NKX3-1Q99801 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.72■■□□□ 1.07
NKX3-1Q99801 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
NKX3-1Q99801 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.72■■□□□ 1.07
NKX3-1Q99801 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
NKX3-1Q99801 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX3-1Q99801 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX3-1Q99801 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
NKX3-1Q99801 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.71■■□□□ 1.07
NKX3-1Q99801 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
NKX3-1Q99801 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX3-1Q99801 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
NKX3-1Q99801 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
NKX3-1Q99801 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX3-1Q99801 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NKX3-1Q99801 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.7■■□□□ 1.06
NKX3-1Q99801 AL162393.1-201ENST00000437852 946 ntBASIC21.69■■□□□ 1.06
NKX3-1Q99801 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.69■■□□□ 1.06
NKX3-1Q99801 AP006261.1-201ENST00000584783 668 ntBASIC21.69■■□□□ 1.06
NKX3-1Q99801 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX3-1Q99801 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX3-1Q99801 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
NKX3-1Q99801 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.68■■□□□ 1.06
NKX3-1Q99801 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
NKX3-1Q99801 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.68■■□□□ 1.06
NKX3-1Q99801 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
NKX3-1Q99801 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NKX3-1Q99801 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NKX3-1Q99801 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NKX3-1Q99801 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NKX3-1Q99801 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NKX3-1Q99801 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NKX3-1Q99801 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
NKX3-1Q99801 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NKX3-1Q99801 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.66■■□□□ 1.06
NKX3-1Q99801 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NKX3-1Q99801 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NKX3-1Q99801 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NKX3-1Q99801 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NKX3-1Q99801 AC091060.1-201ENST00000623524 1766 ntBASIC21.66■■□□□ 1.06
NKX3-1Q99801 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NKX3-1Q99801 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.65■■□□□ 1.06
NKX3-1Q99801 DUX4L28-201ENST00000623687 678 ntBASIC21.65■■□□□ 1.06
NKX3-1Q99801 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX3-1Q99801 AC018358.1-201ENST00000631079 1402 ntBASIC21.64■■□□□ 1.06
NKX3-1Q99801 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
NKX3-1Q99801 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.64■■□□□ 1.05
NKX3-1Q99801 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.64■■□□□ 1.05
NKX3-1Q99801 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX3-1Q99801 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
NKX3-1Q99801 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX3-1Q99801 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX3-1Q99801 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX3-1Q99801 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX3-1Q99801 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX3-1Q99801 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NKX3-1Q99801 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX3-1Q99801 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NKX3-1Q99801 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
NKX3-1Q99801 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.62■■□□□ 1.05
NKX3-1Q99801 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NKX3-1Q99801 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
NKX3-1Q99801 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NKX3-1Q99801 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
NKX3-1Q99801 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
NKX3-1Q99801 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NKX3-1Q99801 AC108673.1-201ENST00000510422 1159 ntBASIC21.61■■□□□ 1.05
NKX3-1Q99801 MIR3665-201ENST00000578708 105 ntBASIC21.61■■□□□ 1.05
NKX3-1Q99801 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NKX3-1Q99801 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.6■■□□□ 1.05
NKX3-1Q99801 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
NKX3-1Q99801 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms