Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.71■■□□□ 1.55
LMX1AQ8TE12 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
LMX1AQ8TE12 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
LMX1AQ8TE12 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC24.69■■□□□ 1.54
LMX1AQ8TE12 U85056.1-201ENST00000616429 682 ntBASIC24.69■■□□□ 1.54
LMX1AQ8TE12 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.68■■□□□ 1.54
LMX1AQ8TE12 AL139393.2-201ENST00000608721 2025 ntBASIC24.68■■□□□ 1.54
LMX1AQ8TE12 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC24.68■■□□□ 1.54
LMX1AQ8TE12 ECEL1P2-201ENST00000461596 1295 ntBASIC24.68■■□□□ 1.54
LMX1AQ8TE12 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
LMX1AQ8TE12 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
LMX1AQ8TE12 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
LMX1AQ8TE12 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.68■■□□□ 1.54
LMX1AQ8TE12 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
LMX1AQ8TE12 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.67■■□□□ 1.54
LMX1AQ8TE12 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
LMX1AQ8TE12 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
LMX1AQ8TE12 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
LMX1AQ8TE12 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
LMX1AQ8TE12 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
LMX1AQ8TE12 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
LMX1AQ8TE12 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
LMX1AQ8TE12 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.66■■□□□ 1.54
LMX1AQ8TE12 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
LMX1AQ8TE12 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
LMX1AQ8TE12 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.65■■□□□ 1.54
LMX1AQ8TE12 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.65■■□□□ 1.54
LMX1AQ8TE12 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
LMX1AQ8TE12 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
LMX1AQ8TE12 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
LMX1AQ8TE12 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
LMX1AQ8TE12 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
LMX1AQ8TE12 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
LMX1AQ8TE12 ABCB10P3-201ENST00000561950 2166 ntBASIC24.63■■□□□ 1.53
LMX1AQ8TE12 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
LMX1AQ8TE12 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
LMX1AQ8TE12 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
LMX1AQ8TE12 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.62■■□□□ 1.53
LMX1AQ8TE12 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
LMX1AQ8TE12 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
LMX1AQ8TE12 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
LMX1AQ8TE12 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC24.62■■□□□ 1.53
LMX1AQ8TE12 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.61■■□□□ 1.53
LMX1AQ8TE12 AL157400.5-201ENST00000507624 621 ntBASIC24.61■■□□□ 1.53
LMX1AQ8TE12 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
LMX1AQ8TE12 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC24.61■■□□□ 1.53
LMX1AQ8TE12 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
LMX1AQ8TE12 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
LMX1AQ8TE12 AL033527.3-201ENST00000566366 1196 ntBASIC24.6■■□□□ 1.53
LMX1AQ8TE12 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.6■■□□□ 1.53
LMX1AQ8TE12 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
LMX1AQ8TE12 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
LMX1AQ8TE12 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
LMX1AQ8TE12 AC018358.1-201ENST00000631079 1402 ntBASIC24.6■■□□□ 1.53
LMX1AQ8TE12 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
LMX1AQ8TE12 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
LMX1AQ8TE12 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
LMX1AQ8TE12 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
LMX1AQ8TE12 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.58■■□□□ 1.53
LMX1AQ8TE12 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
LMX1AQ8TE12 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.58■■□□□ 1.53
LMX1AQ8TE12 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.58■■□□□ 1.53
LMX1AQ8TE12 AL359258.2-201ENST00000564063 1566 ntBASIC24.58■■□□□ 1.52
LMX1AQ8TE12 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.52
LMX1AQ8TE12 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.58■■□□□ 1.52
LMX1AQ8TE12 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.58■■□□□ 1.52
LMX1AQ8TE12 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
LMX1AQ8TE12 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
LMX1AQ8TE12 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
LMX1AQ8TE12 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
LMX1AQ8TE12 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
LMX1AQ8TE12 ST7-205ENST00000393446 2114 ntTSL 5 BASIC24.56■■□□□ 1.52
LMX1AQ8TE12 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
LMX1AQ8TE12 ABCB10P1-201ENST00000614297 2181 ntBASIC24.55■■□□□ 1.52
LMX1AQ8TE12 KRT18P60-201ENST00000312876 1297 ntBASIC24.55■■□□□ 1.52
LMX1AQ8TE12 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.55■■□□□ 1.52
LMX1AQ8TE12 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
LMX1AQ8TE12 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
LMX1AQ8TE12 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.55■■□□□ 1.52
LMX1AQ8TE12 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
LMX1AQ8TE12 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
LMX1AQ8TE12 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
LMX1AQ8TE12 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.54■■□□□ 1.52
LMX1AQ8TE12 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC24.54■■□□□ 1.52
LMX1AQ8TE12 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
LMX1AQ8TE12 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
LMX1AQ8TE12 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
LMX1AQ8TE12 AC007029.1-201ENST00000604183 313 ntBASIC24.51■■□□□ 1.51
LMX1AQ8TE12 AP002414.2-202ENST00000590929 1450 ntBASIC24.51■■□□□ 1.51
LMX1AQ8TE12 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC24.5■■□□□ 1.51
LMX1AQ8TE12 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms